Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi399g00018 ATGGGGAGGATCAAACCTCAAGCTCTGCTACAGCAAAGCAAAAGGAAGAAGGGGCCTTATCGCATAAGTGCAACGACTATTACATTTTATACATTGATTCTTGTCATATTTGTGTTTTTCCTGTTTGCTACACACAGAGATTGGTCCAATAGGACAAGATTTCAACCAGAGAACCACATATCAGTGTTGGAGGATGAAAATACTTCTGTGGAATCCAAGAAATCTGATCTACCTGGATATGCTGTTTTAATCACCTCCAAAGGCTCTATTATAATAGAACTTTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGACTTATGTCAAAAGGGGCACTTCAAGGGGATGCTTTTTCACCAAGTAATTAAGCACTATGTGATTCAGGCAGGTCATGAGAAAGGGCCAGGAGCTACTGAAGATTGGAACCTGAGAGGAAAGAAATATACAAGTATGAATCACGAAGCTTTCATGCTTGGAACTTCTAAGGGAAAATACTTAAATAAAGGATTTGATCTTTTCATCACAACTGCACCAATACCAGATCTAAATGAAAAGCTTGTTGTTTTTGGCCGGGTCGTCAAGGGAGAGGATGTAGTTCAGTCAATTCTTCTCTACAGGAATGATGAACCTCAAGGATTTTACCTTGGGTTGGTTAATCAAGTGATTGAGTTTTGA 681 0.3906 MGRIKPQALLQQSKRKKGPYRISATTITFYTLILVIFVFFLFATHRDWSNRTRFQPENHISVLEDENTSVESKKSDLPGYAVLITSKGSIIIELYKESAPEVVDEFIDLCQKGHFKGMLFHQVIKHYVIQAGHEKGPGATEDWNLRGKKYTSMNHEAFMLGTSKGKYLNKGFDLFITTAPIPDLNEKLVVFGRVVKGEDVVQSILLYRNDEPQGFYLGLVNQVIEF 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi399g00018 226 CDD cyclophilin 82 204 - -
Sebi399g00018 226 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 120 132 IPR002130 GO:0000413|GO:0003755
Sebi399g00018 226 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 173 185 IPR002130 GO:0000413|GO:0003755
Sebi399g00018 226 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 186 201 IPR002130 GO:0000413|GO:0003755
Sebi399g00018 226 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 94 109 IPR002130 GO:0000413|GO:0003755
Sebi399g00018 226 Gene3D - 61 214 IPR029000 -
Sebi399g00018 226 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP21-4 1 203 - -
Sebi399g00018 226 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 83 211 IPR002130 GO:0000413|GO:0003755
Sebi399g00018 226 SUPERFAMILY Cyclophilin-like 76 208 IPR029000 -
Sebi399g00018 226 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 88 204 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi399g00018 Sebi-Chr399 284340 288939 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi399g00018 79 197 U-box Gene Family AT5G67530 30.159 2.02e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi399g00018 - - gmx:100796043 358.992