Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi399g00017 ATGAGAGGAGAAAGAGAGAAATTGGGTAAGATCACTGACTTAGCCGATATCACTCTCTCAACAAAAGAATATATTCTCAGAATAAAGAATATATTCTATTTCCATCAGGCCATCAACTACAAGAATTTCACAATCCGGCTGGTTGATCCCGGAATTCAACAAGATAACTGCTCCTCCCTTCCTCGCTATTTCTTGTCTCAATCTAATTTCACTGGTACTTATAGTTATAGCGATTTCATCAATTATTACACGGATCCATACCAAGCCTATCAAGAAAGACGAATTTTAGATTCATCTTCATCATCAGAGTATGATTATCAGCGTCTTTTCCAGCATGTAGTGTACTTGAACTGTACCAATCCAGTGAGTGACAATCCGAAATATGTGGACACTGCTTCCTCCTGTGTCAATTGGCGCTCCAAATCCAAAGGCCATATTTATGCTATTGCTGGCGATTTATTGGCTAAGGACTTTCGAGTTGATTGCCTTGTGAAGGATCACTGTCGAGGACATCCAAGCTCCTGCATCTACGACTCTTCCAGCGAAAAACTTGAATGTCCTTCGCGCTACTGCCATAATTTTCTCGGTGGTTATTATATGGACGTTTGTGGGACATGGTCTCAGTTGTATATATATGCGCGGGAAACTATTATCGCTATTCCGATAGGACTGCTTGAACTAATAAAAGGACCAAACCCAAACTATGAAGGTGTCACCCAGTATAAATTAGGATTGGTCACAGGACACTATGTTCTACCATCATTCTGGGCAGCCAGATTTCTGTTTGGCGTGACATTATATGTTGCGTTTTTGGTATACAAATGGAGAAAAAGGCATTTATCAATTTATGAAAATATTGAAATATATCTTCAACAAAATAGCATGATGCCCATCAGATACTCATACAAAGAAATTAAGGTCATGGCTAAAGGTTTCAAAGACAAGTTGGGTGAAGGAGGCTTTGGCTCTGTTTTCAAGGGGAACCTGCGTAGTGGGCCTTGTGTGGCAATAAAGATGTTGAGCAAATCCAAAGGTAATGGTCAAGACTTCATTAGTGAAGTAGCAACCATTGGAAGGATACATCATTTGAATGTGGTACAATTAATTGGATTTTGTGTGGAAGGATCTAAACGAGCTCTTGTTTATGAATTCATGCCCAATGGATCTCTTGATAAGTTCATTTTCTCTAAAGAAGGAAGTATGCATTTAAGCTATGACAAAATATATGACATATCAATTGGAGTAGCTCATGGGATTGCTTATCTCCACCATGGATGTGAAATGAAGATTCTACATTTTGATATCAAACCCCATAACATCCTTCTTGATGAGAACTTCACTCCAAAGGTCTCTGATTTTGGGTTGGCAAAGTTGTATTCTGTGGATAATAGCTTTGTCACAATGACTGCAGCAAGAGGGACAATTGGGTACATGGCTCCAGAATTGTTCTACAAAAATTTTGGAGGAGTGACCTATAAGGCTGATGTCTATAGCTTTGGGATGCTTTTGATGGAGATGGCAAGCAAGAGGAAAAACTTGAATCCCCATGTGGAGCATTCTAGCCAACTTTACTTTCCCTTTTGGATTTATGATCAACTTGGAAAAGAGGAAGAGATTGAGATGGAAGATGTCACAGAAGAGGAAAAGAAAATGGTGAAGAAGATGATTATAGTTGCACTTTGGTGTATACAATTGAAGCCAGATGATCGACCCTCAATGAGGAAAGTGGTGGAAATGCTTGAAGGAGATGTTGAAAGCCTTGAAATGCCTCCAAAGCCTTCTCTGTATCCACATGAAACGATTACAACAGGGGATCAAAGCATCAACTCTGAGCAAACAACATCGAGTGACAACATTAGTTCTTCTGGTGATCCTGTGGAAATTGGAACTAATCCTTTGGTAGAGAATATTCCTTGA 1917 0.3944 MRGEREKLGKITDLADITLSTKEYILRIKNIFYFHQAINYKNFTIRLVDPGIQQDNCSSLPRYFLSQSNFTGTYSYSDFINYYTDPYQAYQERRILDSSSSSEYDYQRLFQHVVYLNCTNPVSDNPKYVDTASSCVNWRSKSKGHIYAIAGDLLAKDFRVDCLVKDHCRGHPSSCIYDSSSEKLECPSRYCHNFLGGYYMDVCGTWSQLYIYARETIIAIPIGLLELIKGPNPNYEGVTQYKLGLVTGHYVLPSFWAARFLFGVTLYVAFLVYKWRKRHLSIYENIEIYLQQNSMMPIRYSYKEIKVMAKGFKDKLGEGGFGSVFKGNLRSGPCVAIKMLSKSKGNGQDFISEVATIGRIHHLNVVQLIGFCVEGSKRALVYEFMPNGSLDKFIFSKEGSMHLSYDKIYDISIGVAHGIAYLHHGCEMKILHFDIKPHNILLDENFTPKVSDFGLAKLYSVDNSFVTMTAARGTIGYMAPELFYKNFGGVTYKADVYSFGMLLMEMASKRKNLNPHVEHSSQLYFPFWIYDQLGKEEEIEMEDVTEEEKKMVKKMIIVALWCIQLKPDDRPSMRKVVEMLEGDVESLEMPPKPSLYPHETITTGDQSINSEQTTSSDNISSSGDPVEIGTNPLVENIP 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi399g00017 638 Gene3D Transferase(Phosphotransferase) domain 1 385 595 - -
Sebi399g00017 638 CDD STKc_IRAK 316 582 - -
Sebi399g00017 638 MobiDBLite consensus disorder prediction 585 638 - -
Sebi399g00017 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 430 442 IPR008271 GO:0004672|GO:0006468
Sebi399g00017 638 Gene3D Phosphorylase Kinase; domain 1 284 384 - -
Sebi399g00017 638 ProSiteProfiles Protein kinase domain profile. 310 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi399g00017 638 FunFam PR5-like receptor kinase 385 592 - -
Sebi399g00017 638 MobiDBLite consensus disorder prediction 599 627 - -
Sebi399g00017 638 PANTHER RUST RESISTANCE KINASE LR10-RELATED 283 606 IPR045874 GO:0004672
Sebi399g00017 638 FunFam serine/threonine-protein kinase PBS1-like 281 384 - -
Sebi399g00017 638 SMART serkin_6 310 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi399g00017 638 Pfam Protein tyrosine and serine/threonine kinase 312 580 IPR001245 GO:0004672|GO:0006468
Sebi399g00017 638 ProSitePatterns Protein kinases ATP-binding region signature. 316 338 IPR017441 GO:0005524
Sebi399g00017 638 SUPERFAMILY Protein kinase-like (PK-like) 293 581 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi399g00017 Sebi-Chr399 269513 281338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi399g00017 165 614 Receptor kinase-like Gene Family AT4G18250 42.981 2.77e-110 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Sebi399g00017 PK_Tyr_Ser-Thr 7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi399g00017 - - gmx:100305367 778.859