Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi399g00012 ATGGATTCTCTTCTCTCTTCTGAAAACCGGAACCCAACCTTCCCTTCTGCACCACCCGGAATCCCAACCCCAATAGTAACCCCAAAGCTTGAACCTTCAGACGAATGGGTCGCACCGACCCCACCCGGTTTCTCAAACGGGTCCCACCAACTCGACCTCAACCTCTTCTGCAACGAAACCCTAACCGGTGGCTTCTCCGACCACCGCACTGCCACCAACAACAACGACAATTTGTACTCTGAGTTCAACCGAGTCTCCGAGCTCTTTCGAACCGCCATGGGCCTTCAGCAATCCCAAAACGACACCGTTCCGGACCCGGATTCGCGCGCAATCGTTCCGGTTCCACCGCCGCAGGAGAACAACAACAGCACCGATGGAAACCCTTCGTCGGTGGCCGTCGTGACTCCGCGGCAGCGGAAATGGAAGGAGCTGGTGAGGGTGACTGATGTCGGTGTGATGGATCAGCGGCACTTCCGCGACGTGGTTCGGAGGACTCGAATGGTGTACGATTCGCTTCGTGTGTTAGCGGCTGCAGAAGAAGAGGGAAGGATGGATGTGCGGAGGGTGAGGAGCGATTTGAGGGCTTCGGCAGTGATGAGAAACTGTGGGTTGTGGCTGAATCGTGATAAAAGGATAGTTGGGGCAATTCCAGGGGTTTGCATTGGTGATGTGTTTCTTTACAGGATGGAATTGTGTGTGGTTGGTTTGCACGGTCAACCACAGGCTGGGATTGATTATCTACCTGCTAGCATGAGTTCAAATGGTGAACCAATTGCCACTAGTGTTATAGTCTCTGGTGGGTATGAGGATGATTTGGATGAGGGTGATGTGATCATCTATTCTGGTCATGGTGGTCAGGACAAGCATTCAAGGCAGGTTTTTCATCAGAAGTTGGAAGGAGGGAACCTTGCTATGGAGAGAAGCATGCATTATGGGGTTGAAGTGAGGGTTATTCGCGGGGTTCGGTGTGAGGGGACTGCTGCTGCTTCTGGTAAGGTCTATGTTTATGATGGGTTGTATAGGATTCTTGAGTGTTGGTTTGATGTTGGCAAGTCTGGTTTTGGTGTTTATAAGTATAAGCTGTGGAGGATTGATGGGCAGGCTAAGATGGGTAGTATGGTTATGAAGGAAGCTCTTATGCTTAGGAGAGATCCATTGAGTTTTAAACCGATGTGTTGCCTGTCTCTTGATGTTTCCAACAGGAAGGAGAATGTTCCCGTGAGGCTTTTCAATGACATTGATCGGAATCATGATCCTCTTTGTTATGAGTACCTTGCAAAGACTACTTTTCCGCAGTTTGTGTTTCATCAGAGTGGGAGGGCCACAGGTTGTGAGTGCGTGGACGGTTGTATGGATGGATGCTTTTGTGCCATGAAGAACGGAGGAGAGTTTCCTTATAGTCAAAATGGGATTCTCTTGAGAGGGAAGCCTATAATTTTTGAATGCGGCCCTTTTGTGGCTGTCCTCCTCATTGTCGGAACCGTGTCACGCAAAAGGGGCTGA 1503 0.5017 MDSLLSSENRNPTFPSAPPGIPTPIVTPKLEPSDEWVAPTPPGFSNGSHQLDLNLFCNETLTGGFSDHRTATNNNDNLYSEFNRVSELFRTAMGLQQSQNDTVPDPDSRAIVPVPPPQENNNSTDGNPSSVAVVTPRQRKWKELVRVTDVGVMDQRHFRDVVRRTRMVYDSLRVLAAAEEEGRMDVRRVRSDLRASAVMRNCGLWLNRDKRIVGAIPGVCIGDVFLYRMELCVVGLHGQPQAGIDYLPASMSSNGEPIATSVIVSGGYEDDLDEGDVIIYSGHGGQDKHSRQVFHQKLEGGNLAMERSMHYGVEVRVIRGVRCEGTAAASGKVYVYDGLYRILECWFDVGKSGFGVYKYKLWRIDGQAKMGSMVMKEALMLRRDPLSFKPMCCLSLDVSNRKENVPVRLFNDIDRNHDPLCYEYLAKTTFPQFVFHQSGRATGCECVDGCMDGCFCAMKNGGEFPYSQNGILLRGKPIIFECGPFVAVLLIVGTVSRKRG 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi399g00012 500 SMART preset_2 395 487 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Sebi399g00012 500 SUPERFAMILY SET domain 387 484 IPR046341 -
Sebi399g00012 500 Gene3D - 211 371 IPR036987 -
Sebi399g00012 500 Gene3D SET domain 372 488 IPR046341 -
Sebi399g00012 500 MobiDBLite consensus disorder prediction 1 32 - -
Sebi399g00012 500 Pfam Pre-SET motif 399 483 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Sebi399g00012 500 SMART G9a_1 209 367 IPR003105 -
Sebi399g00012 500 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 196 379 - -
Sebi399g00012 500 MobiDBLite consensus disorder prediction 97 135 - -
Sebi399g00012 500 Pfam SAD/SRA domain 213 367 IPR003105 -
Sebi399g00012 500 ProSiteProfiles YDG domain profile. 214 363 IPR003105 -
Sebi399g00012 500 MobiDBLite consensus disorder prediction 115 134 - -
Sebi399g00012 500 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 84 484 - -
Sebi399g00012 500 SUPERFAMILY PUA domain-like 195 377 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi399g00012 Sebi-Chr399 180457 181959 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi399g00012 117 484 Su(var)3-9 homologs AT5G04940 36.605 3.03e-67 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi399g00012 K11420 - gmx:100804592 720.309