Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi399g00008 ATGACTGTGTTTGAAAGTTGGGAAAGAAAGAGAGTGAGAGAGCTGTCATCAAGTCTCAACTCTCAAACAACATCCATGACTTGTAACAGGCGAAAGAAGCGTTCTGTTCCCTCTGCTGCAAATGCAATCCGTTTCTTTAAGATTATTACAACAACATCTCTTGATGCTGCAAAGCTTAAAGTTCTATATATGCAGAAGATTCCAAACAATTTCACTAGGAAATATGGTGGTGATATGTCAAACCCTACATTTCTCAAGCCTCCAGATGGCACTGAATGGACAATCAATTGGACTAAAGATGATGGTGATATTTGGTTTCAAAAGGGTTGGAAAGAATTTGCTACATATTACTCCCTTGATTATGGGCATATGGTGTTGTTTGAATACAAGGGTACTTCTCATTTTGAGGTGCATGTATTTGACAAGAGTACCCTTGAAATACAATATCCTTTCCATGCCACTCAAGATGAACAGGACAATGACAACTCTGTTGAAATTTTGGAAGAACTACCTCCATCTTCATGCAACAAGAGGAAGACTAAACTGAAATCACCAGTGTCATGTCCTCAACCACATAAGAAACTGAGAACTGACACAAGTGGAGATGTTGAAAGAAGCTCCAAATTGCAAAGCATGCCTGAACATGTCCAAATTAAAGAGGATGTGGGTGCTACCACTGAATGCCTAAAGGTGGAGCAGTTAGTTTGTAAAATTACTGAAGCTTTAAACAGAGCTGCAACCTTCAGTTCTAAAAGTCCCTCTTTCATGGTTGTCATGAAACCTTCCTATTTTCATCAATTTTACTTGCATGTCCCATCACAATTTGTAGGAAAATATTTGAAGAAAAAGCAAAGTGATATCCTCCTTCAGGTCTTGGAGGGGAGAACTTGGTATGCTAGTTATAGTTTCGGCAGAATTAAAGGTGGATGGAAGAAATTTTCATCAGATAACAATTTGAAAGTGGGGGATGTTTGTCTTTTTGAGTTGACCAAAAAACGACCCCTTTCTTTCAAAGTTGTAATCTTTAGCATTGGGGAAGAACTACATTCCCCTCCACCACAAGAGGATATGGGTGTTACCACTGAATGCCTAAAAGTGGAGCAGTTAACTTCTGAAATTACTAAAGCTGTAATGGGGGTCACAAACTTCAGATCTAAAAATCCTTCTTTCATGGTTGTCATGAAACCTGCCTATCTTCGTCATTACATGAATGTCCCATCAGAGTTTATAGCAAAATATTTGAAGAAAAAGCCAAGTGATATCCTCCTTCAGGTATTGAACAGGAGAACTTGGCCCGTTCGTTATAAGTTTGGCAAAATTACTACTGGATGGAAGAAATTTGCATCAGGTAATAATTTGAAAGTGGGGGATGTTTGTCTTTTTGAGTTGACTAAAAGCCTACCCCTTTCTTTCAAAGTTTTAATCTTTAGAGTTGGGGAAGAAATACATTCCTCTCCACCACAAGAATCAATTCAAGGCTATGGAGTCAATTGGAGAGACCTTGGGAGAATCCCACACATTGAAAGTAAAACTGTTATTGTCAGTGGAGGTGGTAAGGCAACTCAACGAACTTCACGGCTGATTACTAGTCCCAACTCCTTCACAAATGGAGCTCTTGAAGAAGCTAACAAATTCACCTCGCAAAACCCCTTTTTCACAGTCATTATAGAGCCTGATTTTCATGAGGATTATAGACCGCGTGTACCAAATGCATTCGTCAGAAACTACTTCAATAACAAGCAGCAGATGGTGATGTTACAATACGGAAATAAACTGTGGGATGTGAAGTTGCTCTGTTATCCATATGCAGGGTCAAGCAAGTTTTCTAGAGGTTGGTCTCTATTTGCCAGAGAAAGTAAATTGTTAGGTGGAGATGTTTGTGTGTTTGAGCTCATCAAAAGGGAAGATTTTGTGCTTCATGTTCATATTTTCAGAGGCCACTTTTAG 1947 0.3903 MTVFESWERKRVRELSSSLNSQTTSMTCNRRKKRSVPSAANAIRFFKIITTTSLDAAKLKVLYMQKIPNNFTRKYGGDMSNPTFLKPPDGTEWTINWTKDDGDIWFQKGWKEFATYYSLDYGHMVLFEYKGTSHFEVHVFDKSTLEIQYPFHATQDEQDNDNSVEILEELPPSSCNKRKTKLKSPVSCPQPHKKLRTDTSGDVERSSKLQSMPEHVQIKEDVGATTECLKVEQLVCKITEALNRAATFSSKSPSFMVVMKPSYFHQFYLHVPSQFVGKYLKKKQSDILLQVLEGRTWYASYSFGRIKGGWKKFSSDNNLKVGDVCLFELTKKRPLSFKVVIFSIGEELHSPPPQEDMGVTTECLKVEQLTSEITKAVMGVTNFRSKNPSFMVVMKPAYLRHYMNVPSEFIAKYLKKKPSDILLQVLNRRTWPVRYKFGKITTGWKKFASGNNLKVGDVCLFELTKSLPLSFKVLIFRVGEEIHSSPPQESIQGYGVNWRDLGRIPHIESKTVIVSGGGKATQRTSRLITSPNSFTNGALEEANKFTSQNPFFTVIIEPDFHEDYRPRVPNAFVRNYFNNKQQMVMLQYGNKLWDVKLLCYPYAGSSKFSRGWSLFARESKLLGGDVCVFELIKREDFVLHVHIFRGHF 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi399g00008 648 Gene3D - 237 345 IPR015300 -
Sebi399g00008 648 Gene3D - 369 481 IPR015300 -
Sebi399g00008 648 Gene3D - 533 647 IPR015300 -
Sebi399g00008 648 SMART B3_2 45 143 IPR003340 GO:0003677
Sebi399g00008 648 SMART B3_2 255 345 IPR003340 GO:0003677
Sebi399g00008 648 SMART B3_2 390 479 IPR003340 GO:0003677
Sebi399g00008 648 SMART B3_2 551 647 IPR003340 GO:0003677
Sebi399g00008 648 MobiDBLite consensus disorder prediction 175 209 - -
Sebi399g00008 648 SUPERFAMILY DNA-binding pseudobarrel domain 545 645 IPR015300 -
Sebi399g00008 648 CDD B3_DNA 253 343 IPR003340 GO:0003677
Sebi399g00008 648 CDD B3_DNA 551 645 IPR003340 GO:0003677
Sebi399g00008 648 CDD B3_DNA 388 477 IPR003340 GO:0003677
Sebi399g00008 648 Gene3D - 38 144 IPR015300 -
Sebi399g00008 648 ProSiteProfiles B3 DNA-binding domain profile. 50 143 IPR003340 GO:0003677
Sebi399g00008 648 SUPERFAMILY DNA-binding pseudobarrel domain 44 143 IPR015300 -
Sebi399g00008 648 ProSiteProfiles B3 DNA-binding domain profile. 551 647 IPR003340 GO:0003677
Sebi399g00008 648 SUPERFAMILY DNA-binding pseudobarrel domain 384 478 IPR015300 -
Sebi399g00008 648 ProSiteProfiles B3 DNA-binding domain profile. 388 479 IPR003340 GO:0003677
Sebi399g00008 648 SUPERFAMILY DNA-binding pseudobarrel domain 248 343 IPR015300 -
Sebi399g00008 648 Pfam B3 DNA binding domain 392 477 IPR003340 GO:0003677
Sebi399g00008 648 Pfam B3 DNA binding domain 66 142 IPR003340 GO:0003677
Sebi399g00008 648 Pfam B3 DNA binding domain 257 343 IPR003340 GO:0003677
Sebi399g00008 648 Pfam B3 DNA binding domain 551 646 IPR003340 GO:0003677
Sebi399g00008 648 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 368 481 IPR044837 -
Sebi399g00008 648 CDD B3_DNA 44 141 IPR003340 GO:0003677
Sebi399g00008 648 ProSiteProfiles B3 DNA-binding domain profile. 254 345 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi399g00008 Sebi-Chr399 115548 119397 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi399g00008 538 645 B3 DNA Binding Superfamily AT3G18990 39.640 2.50e-16 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi399g00008 B3 6.5e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi399g00008 - - lja:Lj5g3v0508090.1 444.121