Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi399g00007 ATGGTCTATATATATATGCAGAAGATTCCAAACGGTTTCACTAGGAAATATGGTGGTGATATGTCAAACCCAATGTATCTCAAGCCTCCTGATGGCACTGAATGGAAAATGTATTGCACTAAACATGACACTGATATTTGGCTTCAAAATGGTTGGAAAGAGTTTGCTACACATTACTCCCTAGATCATGGCCACATGGTGTTGTTTGAATACAAGGATAGTTCTCATTTTGAGGTACATATATTTGACAATAGTACCCTTGAAATACAATATCCTTTCCATGCCACTCAAGATGAACAGGACAACATTAGTGACAGCTCAGTTGAAATTTTGGAAGAACTACCTCCATCTTCATGCAACAAAAGGAAGACTAAAAAGAAATCACCAATGTCATGTCCTCAACCATGTCAGAAATTGAGAACTGGCATAGGTGGAGATGTTAGAAGAAGCCCCAAAAAGCAAAACTTGCCTAAACATGTCCAAATTAAAGAGGATATGGGTGGTACCACTGAATGCCTTGGAGTGGAAAAGTTAACTTGTAAAGTTAATGAAGCTTTAAAGAGAGCCACAGCCTTCAGATCTGAAAATCCCTCTGTTATGATTGAAATGAAACCTTCTTATGTTGTATATAACTTGTTTCAATCTTTCGAGTTGGGGAAGAACCACATTCCCCTCCACCACAAGAATCAGTTCAAGGAGGTGAAGGTCAATTGGATAGACCCTTGGACTTATTGGAGAATACCGGACATTGAAAGTGCAACTGTTAGGTAA 771 0.3865 MVYIYMQKIPNGFTRKYGGDMSNPMYLKPPDGTEWKMYCTKHDTDIWLQNGWKEFATHYSLDHGHMVLFEYKDSSHFEVHIFDNSTLEIQYPFHATQDEQDNISDSSVEILEELPPSSCNKRKTKKKSPMSCPQPCQKLRTGIGGDVRRSPKKQNLPKHVQIKEDMGGTTECLGVEKLTCKVNEALKRATAFRSENPSVMIEMKPSYVVYNLFQSFELGKNHIPLHHKNQFKEVKVNWIDPWTYWRIPDIESATVR 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi399g00007 256 ProSiteProfiles B3 DNA-binding domain profile. 1 85 IPR003340 GO:0003677
Sebi399g00007 256 MobiDBLite consensus disorder prediction 114 134 - -
Sebi399g00007 256 Pfam B3 DNA binding domain 8 84 IPR003340 GO:0003677
Sebi399g00007 256 SUPERFAMILY DNA-binding pseudobarrel domain 5 85 IPR015300 -
Sebi399g00007 256 Gene3D - 3 86 IPR015300 -
Sebi399g00007 256 PANTHER B3 DOMAIN-CONTAINING 8 201 - -
Sebi399g00007 256 SMART B3_2 5 85 IPR003340 GO:0003677
Sebi399g00007 256 CDD B3_DNA 9 83 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi399g00007 Sebi-Chr399 109600 111007 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi399g00007 8 208 B3 DNA Binding Superfamily AT3G18990 25.106 9.05e-18 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi399g00007 B3 4.9e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi399g00007 - - lja:Lj5g3v0508090.1 268.855