Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi399g00006 ATGCAGAAGATTCCAAACGGTTTCACTAAGAAATATGGTGGTGATATGTCAAACCCAATGAATCTCAAGCCTCCTGATGGCACTGAATGGAAAATGTATTGGACTAAACATGATTCTGATATTTGGTTTCAAAATGGTTGGAAAGAATTTGCTACAAATTACTCCTTAGATCATGGACACATGGTGTTGTTTGAATACAAAGATAGTTCTCATTTTGAGGTACATATATTTGACAAGAGTACCCTTGAAATACAATATCCTTTCCAATTCCATGGTAGCCAAGAAAACCTTGACAAGATCAGTGATGACTCTGTTGAAATTTTGGATGAGCTGCCTCCATCTTCATGCAAGAAGACTAAACTGAAATCACCAATGTCAAGTCCTCAACCAAGTAAGAAATTGAAAACTGGCACAAGTGGAAAAGTTGAAAGAAGCCCCAAATTTCAAAACATGGGTAAACATGTCAAAATTAAAGGTAGTCAGTCTCAAGGGACAAACTTTGAGAATTCAACATTTGCATCTGACAAGGAAGAATTGGATAGTGATGGAGTCAATTGTATAGACCCTGGGAGAATCCCGGACAATGAAGGTGAGATGGCAACTCAACAAAGTGCTCTACACCCCTTCATAAATGGAGCTCTGAAAGAAGCTAGTAAATTCACCTCGGAAAATCCCTTTTTCATAGTCTATGTAAAGCCAGATCAGGGGCACTATTACAGACCGTATGTACCAAATGCTTTCATCACAAAGTACTTCAACAAAAGGAAGCGGATTGTGATGTTACAGTTTGGAAAGAAATTGTGGCCTATCAAGTTGCTCTATTATCCACACGGAGCCAAGTTGTCCGGAGGTTGGTCTCTATTTGCCAGAGAAAGTAAATTGTTAGGTGGAGATGCTTGTCTTTTTGAGCTCATCAACAGGGAAGATTATATGCTTGATGTTCATATTTTCAGAGACAATTGA 963 0.3853 MQKIPNGFTKKYGGDMSNPMNLKPPDGTEWKMYWTKHDSDIWFQNGWKEFATNYSLDHGHMVLFEYKDSSHFEVHIFDKSTLEIQYPFQFHGSQENLDKISDDSVEILDELPPSSCKKTKLKSPMSSPQPSKKLKTGTSGKVERSPKFQNMGKHVKIKGSQSQGTNFENSTFASDKEELDSDGVNCIDPGRIPDNEGEMATQQSALHPFINGALKEASKFTSENPFFIVYVKPDQGHYYRPYVPNAFITKYFNKRKRIVMLQFGKKLWPIKLLYYPHGAKLSGGWSLFARESKLLGGDACLFELINREDYMLDVHIFRDN 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi399g00006 320 MobiDBLite consensus disorder prediction 119 136 - -
Sebi399g00006 320 MobiDBLite consensus disorder prediction 1 20 - -
Sebi399g00006 320 CDD B3_DNA 4 78 IPR003340 GO:0003677
Sebi399g00006 320 MobiDBLite consensus disorder prediction 111 145 - -
Sebi399g00006 320 SMART B3_2 1 80 IPR003340 GO:0003677
Sebi399g00006 320 SMART B3_2 226 320 IPR003340 GO:0003677
Sebi399g00006 320 ProSiteProfiles B3 DNA-binding domain profile. 226 320 IPR003340 GO:0003677
Sebi399g00006 320 SUPERFAMILY DNA-binding pseudobarrel domain 3 80 IPR015300 -
Sebi399g00006 320 Gene3D - 1 81 IPR015300 -
Sebi399g00006 320 ProSiteProfiles B3 DNA-binding domain profile. 1 80 IPR003340 GO:0003677
Sebi399g00006 320 CDD B3_DNA 226 318 IPR003340 GO:0003677
Sebi399g00006 320 PANTHER B3 DOMAIN-CONTAINING 3 315 - -
Sebi399g00006 320 SUPERFAMILY DNA-binding pseudobarrel domain 220 318 IPR015300 -
Sebi399g00006 320 Pfam B3 DNA binding domain 226 319 IPR003340 GO:0003677
Sebi399g00006 320 Pfam B3 DNA binding domain 3 79 IPR003340 GO:0003677
Sebi399g00006 320 Gene3D - 210 320 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi399g00006 Sebi-Chr399 100640 102243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi399g00006 3 320 B3 DNA Binding Superfamily AT3G18990 30.030 2.22e-39 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi399g00006 B3 2.2e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi399g00006 - - lang:109359484 337.421