Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi399g00003 ATGTCAAATCCAATACATCTCAAACTTCCAAATGGTGCTGGATGGGAAATATCATGGGAAAGTCATGATAGTGGCATTTGGCTTAAGAAAAATTGGAATAAATTTGCACAATCACTATCACTTGGTTATGGATATTTTTTAGTTTTCAAGTATATAGGAGGATCTAATTTTCTTGTTGAGGTATTTCATTATAATAGTTTAGAAATAGACTATTCAAGTATAAGATGCATCAATGATGATGAAGGTTCCAACGAACATGATAAACAAGTTTTGGAGCACAATGATTGTGTGGAGATTGTGGATCAATGTGAAAGATCCACACAACCTCTTAAGAAAAAGAAAGCCAACCCAAGTGAAGAATGGGCTAACAGGGGAGACATAGTTAAAGCCAAGAATTACTCATCAAAAGCTGAAGTTGTTAAAGAGATGATGGCCAAGAATTTTCATTTGGAGAACCCTTTTTTCATACTTATATTGAAGCCAAGTTATGTGCAGAGCAATATATTGATGGTACCGTGTGAGTTTTCTAGAAAATATTTGAAGGACTTAGAAGGGATTGCAACAATTCAGGTTGATGGGGATGAGAATAGGTGTGGACATCGTGTTAGTTTCAAGTTCTGTGATCCTGAAAAACGAACTAGATTCAGCACTGATTCTGATGAAAGTCATGGTATAAATCAGAGTACATTCCAGTATTGTGTACCAAAATGGTTCTTGGAGAGACACAGATGTGATGGAAAAATTGTGAAGCTGAAAGTAGAGAAAACATCGTGGGATGTAAGAGTGATCAACTATCCGAATGTGGGTTCAGGTAGATTCTCTAAAGGTTGGACTGCATTTGTGAGAAAATGCAAATTGAACATTGGAGACATTTGTAAGTTTGAGATGGTTGATGAGGAAAAGCTTGTGCTCAAAGTTTCAATCACAAAATGTGGCCAACACTGA 945 0.3619 MSNPIHLKLPNGAGWEISWESHDSGIWLKKNWNKFAQSLSLGYGYFLVFKYIGGSNFLVEVFHYNSLEIDYSSIRCINDDEGSNEHDKQVLEHNDCVEIVDQCERSTQPLKKKKANPSEEWANRGDIVKAKNYSSKAEVVKEMMAKNFHLENPFFILILKPSYVQSNILMVPCEFSRKYLKDLEGIATIQVDGDENRCGHRVSFKFCDPEKRTRFSTDSDESHGINQSTFQYCVPKWFLERHRCDGKIVKLKVEKTSWDVRVINYPNVGSGRFSKGWTAFVRKCKLNIGDICKFEMVDEEKLVLKVSITKCGQH 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi399g00003 314 Gene3D - 134 219 IPR015300 -
Sebi399g00003 314 Gene3D - 220 312 IPR015300 -
Sebi399g00003 314 SUPERFAMILY DNA-binding pseudobarrel domain 228 311 IPR015300 -
Sebi399g00003 314 PANTHER B3 DOMAIN-CONTAINING 1 301 - -
Sebi399g00003 314 Pfam B3 DNA binding domain 228 308 IPR003340 GO:0003677
Sebi399g00003 314 ProSiteProfiles B3 DNA-binding domain profile. 1 65 IPR003340 GO:0003677
Sebi399g00003 314 Gene3D - 1 66 IPR015300 -
Sebi399g00003 314 CDD B3_DNA 234 310 IPR003340 GO:0003677
Sebi399g00003 314 SMART B3_2 154 312 IPR003340 GO:0003677
Sebi399g00003 314 SUPERFAMILY DNA-binding pseudobarrel domain 149 198 IPR015300 -
Sebi399g00003 314 ProSiteProfiles B3 DNA-binding domain profile. 257 310 IPR003340 GO:0003677
Sebi399g00003 314 SUPERFAMILY DNA-binding pseudobarrel domain 4 72 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi399g00003 Sebi-Chr399 45496 47437 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi399g00003 1 307 B3 DNA Binding Superfamily AT3G18990 24.852 8.88e-17 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi399g00003 B3 5.5e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi399g00003 - - lja:Lj0g3v0114559.1 213.001