Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi399g00002 ATGCACGTTTCTTCTTCTGATTCTTTCTTAACTCAGATAAAAAAGAACGATGCTAGCATAGATCTAATCTTCACTGTAGAGGAGAACGCAGAATCGTCCTCTTCCACTGCGAAATTGGAATGGAAACCAACATTTAATCCCTTTCTTTTTGGGAGCTTCGAATCAGTGAACCCTTTGGAGGAGGAGAAAGTTTCTCCGGCTTCAATATCCAGCACATGGAAACTGAAGATCCAACAAATGCTTGGTGATGATGAAGCTTTTAAGTATCCTCCAGTTGGTTCGTTGAAGACCACGAAGGATCCTACCTTTTCCGTCCAAGACCGCGATGAAGTAAAACGTAACGTTCGTCACAGTGGTTGTAGGCACTCACTCCACGATCAGAGGAGAACTATGCCTACCATCAGTGTGGGGCGAGATCGCCTTTTTGTGACTCTAGGAAGAACTTACATGCAAGAGGAATTCGAAGACCTCTGCTTCAATTTTGGGATAGAGCTCGACGACGTCACCACAAAAAAGGCAATTATGAGAAAAGAGAAGCATTTGGAGGAAGAAGAAGTTGATGAGGATGAAGAAGTTATCTCCAAAATCGAAGTTCCTGTAAATAGGTATGACCTGCTCTGCCGTGACGGACTTACTCAATACCATGTGCAACACTTGTTCGCTGAAATACCTCAAAGGAATTTTGATTTGTGGATGATACCACGGTTATTTGCATATGCTTTGGAATACAAGAGTGACATCTTTGGGGAGAAGGGAATTTTACTTGGTGTTGTTCATGGAATTGTTGAATCCCTACTTAGGAGGTACATTGAAAATGGAATGAGTGAAGATCTGACTTATAAGAACACTGTTGAGTCTGTAATAGGAATTATACCTAAAACCATCTCAACTAAGGCTAGTGGTAGCAAGATTCGTAGTGTTGTTCCAAAGGATGTCAATGTTGCAGTTGGCACCATCAAAACAAAGAGGACTGTTCAGTTTGTTAAATCTGTGGAGATGCACCATGAGGCTCTCCAAGAGGCACTACCAGGTGACAATGCAGTATTCAATGTGAAGAATGTTACAGTCAAGTATCTCAAGCGTGTTTTTGTTGCCTCAAATTCAGCGCGAAGTATCAGCCCTGATGAGAGGAAACTTTTATATGAATTATTCCAGAAGCAGAGGCATGTTGCTGGGAGATCTGCAATGGTCAACCAGCTTCCAGTGGTGCAGATGCTGCTATCGAAACTTGTGGTTGTTTCAGTAGCAACTGTTATGATGGAGGATGTGGCTGAAAATGTAAATGGTCTAGCAGATATTTCATTTGATAATTTAGATGAGACATGTCTGGATGTGATTCAACAGGCTCAATCTGGAACTAGGAAGACCGCAATATTCTGCTCTGGAAGTTTGCAGCAGCTTGATTATGGCTTGGTTGAGAAAGTTATGCGAGCTCTTGGTGATTACCTTAGTGTTAAAGTTCATGGTTGTGTTGGTGGGACAAGTGTTTGTGAAGATCAATGCATTCTCCAAGGCCAAGCTGGTGTCCATACTGTTCTTGGCACTCCAGGATGTGGAAACCACAGAAAAGCATAA 1575 0.4222 MHVSSSDSFLTQIKKNDASIDLIFTVEENAESSSSTAKLEWKPTFNPFLFGSFESVNPLEEEKVSPASISSTWKLKIQQMLGDDEAFKYPPVGSLKTTKDPTFSVQDRDEVKRNVRHSGCRHSLHDQRRTMPTISVGRDRLFVTLGRTYMQEEFEDLCFNFGIELDDVTTKKAIMRKEKHLEEEEVDEDEEVISKIEVPVNRYDLLCRDGLTQYHVQHLFAEIPQRNFDLWMIPRLFAYALEYKSDIFGEKGILLGVVHGIVESLLRRYIENGMSEDLTYKNTVESVIGIIPKTISTKASGSKIRSVVPKDVNVAVGTIKTKRTVQFVKSVEMHHEALQEALPGDNAVFNVKNVTVKYLKRVFVASNSARSISPDERKLLYELFQKQRHVAGRSAMVNQLPVVQMLLSKLVVVSVATVMMEDVAENVNGLADISFDNLDETCLDVIQQAQSGTRKTAIFCSGSLQQLDYGLVEKVMRALGDYLSVKVHGCVGGTSVCEDQCILQGQAGVHTVLGTPGCGNHRKA 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi399g00002 524 SUPERFAMILY Translation proteins 314 358 IPR009000 -
Sebi399g00002 524 Gene3D - 131 218 - -
Sebi399g00002 524 PANTHER PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 131 230 IPR045060 GO:0004826|GO:0006432
Sebi399g00002 524 Pfam Acetohydroxy acid isomeroreductase, catalytic domain 242 298 IPR000506 GO:0004455|GO:0009082
Sebi399g00002 524 Pfam Phe-tRNA synthetase beta subunit B1 domain 131 213 IPR040659 -
Sebi399g00002 524 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 242 297 IPR008927 -
Sebi399g00002 524 Gene3D - 236 338 IPR013328 GO:0016491
Sebi399g00002 524 FunFam Phenylalanine--tRNA ligase beta subunit 131 220 - -
Sebi399g00002 524 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 444 518 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi399g00002 Sebi-Chr399 22111 25107 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi399g00002 443 517 Eukaryotic Initiation Factors Gene Family AT3G13920 66.304 5.08e-27 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi399g00002 K01890 - gmx:100805249 149.828