Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi399g00001 ATGTCAAATCCAATACTTCTCAAACTTCCAAATGGTGCTGAATGGGAAATATCATGGGAGAGTGATGATAGAGGCATTTGGCTTAAGAAGAATTGGAATAAATTTGCACAGTCTCTATCACTTGGTTATGGATATTTTTTAGTCTTCAAGTATAAAGGAGGATCAAATTTCCTTGTTGAGGTATTTCATTATAATAGTTTAGAAATAGACTATTCAAGTATAAGATGCATCAATGATGGTGAAGGTTCCAATGAACATCATAAACAAATTGAGGAGGAGGATGATTGTGTGGAGATTGTGGATCCATGTGAAAGACCCACACAACCTCTTAAGAAAAAGAAAACCAACTCAAGTGAAGAAGATTCTGATGAAAGTCATGATATGAATCAGAATACATTTCAGGTTCATGTAACAAAATATCACCCGTATTGCGTACCAAAATGGTTCATGGAGAGACACAGATGTGATGGAAAATTGGTGAAGCTGAAAGTAGAGGAAACATCGTGGGATGTAAAAGTGATCAACAATCCGAAGATGAGTTTTGGTAGATTCTCTGGAGGTTGGCCTGCATTTGTGAGAGAATGCAAATTGAACATTGGAGACATTTGTAAGTTTGAGATGGTTGATGAGGAAAAGCTTGTGCTCAAAGTTTCAATCACAAAATGTGGCCAACACTTAGGAGTTTAA 687 0.3639 MSNPILLKLPNGAEWEISWESDDRGIWLKKNWNKFAQSLSLGYGYFLVFKYKGGSNFLVEVFHYNSLEIDYSSIRCINDGEGSNEHHKQIEEEDDCVEIVDPCERPTQPLKKKKTNSSEEDSDESHDMNQNTFQVHVTKYHPYCVPKWFMERHRCDGKLVKLKVEETSWDVKVINNPKMSFGRFSGGWPAFVRECKLNIGDICKFEMVDEEKLVLKVSITKCGQHLGV 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi399g00001 228 CDD B3_DNA 2 62 IPR003340 GO:0003677
Sebi399g00001 228 SMART B3_2 132 223 IPR003340 GO:0003677
Sebi399g00001 228 MobiDBLite consensus disorder prediction 107 127 - -
Sebi399g00001 228 Pfam B3 DNA binding domain 134 219 IPR003340 GO:0003677
Sebi399g00001 228 Pfam B3 DNA binding domain 5 62 IPR003340 GO:0003677
Sebi399g00001 228 PANTHER B3 DOMAIN-CONTAINING 1 212 - -
Sebi399g00001 228 ProSiteProfiles B3 DNA-binding domain profile. 168 221 IPR003340 GO:0003677
Sebi399g00001 228 MobiDBLite consensus disorder prediction 107 128 - -
Sebi399g00001 228 Gene3D - 110 223 IPR015300 -
Sebi399g00001 228 SUPERFAMILY DNA-binding pseudobarrel domain 3 72 IPR015300 -
Sebi399g00001 228 SUPERFAMILY DNA-binding pseudobarrel domain 136 222 IPR015300 -
Sebi399g00001 228 Gene3D - 1 66 IPR015300 -
Sebi399g00001 228 ProSiteProfiles B3 DNA-binding domain profile. 1 65 IPR003340 GO:0003677
Sebi399g00001 228 CDD B3_DNA 133 221 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi399g00001 Sebi-Chr399 4415 6427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi399g00001 112 226 B3 DNA Binding Superfamily AT3G18990 26.190 5.62e-06 44.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi399g00001 B3 8e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi399g00001 - - mtr:112418283 139.428