Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi398g00035 ATGAAAGCTTTTAAGTTATTTGGGAGAAAGCATGAAAAAAAGACTCTTAGTTCATTCCCTACTTCAACAGAGAAAGACTCTCTGAAACACAGAAAGGTGAGGGAAGCATTGAAGACATTTAAGGACTTATATTACAAGCATTATTGCCAGTTTAAAGAAGACAAACTTGCTGGAAAATCAAAAACAAATGCTCTACAGGAAGTAGCAATTTCAATGAGAATGAATCATAGATGGGTGAACACTATAAAGAGAATTGGACATGTGGATGGAATTGAAGTAGGTGATAAGTTCCAATATAGGGCTGAACTCTGTGTTATTGGCCTCCATAATCAGTTTTCAAGTGGTATTGATTACATGGGAAAGGATATGTACTCTTTGGCCACAAGCATTGTTGTAACCAGTCGCTATTCTAATGTTATGAAGTCCAATGGTTGCTTGGTTTATGAGGGTCAAGGAGGAAATCCTAAAGTAGGAAGTAATGTTTCTCCCCATGATCAGAAATTAGAGGCAGGAAATCTTGCTTTGAGAAATAGCATGGAGGCTAGAAGTCCAGTGAGGGTGATATTGAAGGTTGGTAGAAAATATGAATCTGATGGGATGGACATGTGGAGCAATCCTCAGTACTCATTTATATATGATGGATTGTATTTAGTGAACCAGATGACCGAAGAAAGGGGAGAATATGGAAAACTAGTATTCAAGTTTACTTTGAACAAAATTTCAGACCAACCAACACATGTTGCTCCTGAGGATGTGGTTATGGATGGACGTTTTGCAAGTTCTAGACGGAAATCTAAAGGATCTGTAGCTCAAAAGCATATTGTTCGAATGAATGATGTTTCGAATGGCAAAGAAAAGTTACCTATTCGAGTGGTGACTCCAATTGATCATGGTCAAATGCCTGCATCATTTGAATACATGGTAAACATGGTTTATGGAGATAGTGACAAGAGACTAGCTTATCCCAATAAATCTTCCCTTATATATGAGTGTGGCCCTTCTTGCAAGTGCTCCTCATCTTGCATTAACCGAGTAAGTCAGTGTGGCATTCAGGTTCAGTTAGAAATCTTCAAGACAGAATATAAGGGTTGGGGTGTTAGAACACGCTCTTTCATTCGAAGTGGATGCTTTGTGTGCGAGTTCATTGGAGAAGTCTATCAAAGTCACAATAGAAAAGCTAGATCAAGACCTGATGTTGATGACTACATATTAAGCCTAGGTGTTGGCAAGGGTTTCATTGATGCAACAAATCGTGGAAACATTGCAAGATTTATAAATCATAGCTGTACTCCTAATCTTTGCTTCAAAGATGTAATCTATGATTCCAATAATAAGAGCATTCCCCATAAAATGCTGTTTGCGGTGAAGGACATACCTTCTGGTAGGGAGCTGAGTTATAATTATAATAGCTGTAAGGGAAAAATTATCAAGGTTGGGAACAATGATTGCTATTGTGGTTCACGGGAATGTAATGGACAGATTTACATTTGA 1491 0.3796 MKAFKLFGRKHEKKTLSSFPTSTEKDSLKHRKVREALKTFKDLYYKHYCQFKEDKLAGKSKTNALQEVAISMRMNHRWVNTIKRIGHVDGIEVGDKFQYRAELCVIGLHNQFSSGIDYMGKDMYSLATSIVVTSRYSNVMKSNGCLVYEGQGGNPKVGSNVSPHDQKLEAGNLALRNSMEARSPVRVILKVGRKYESDGMDMWSNPQYSFIYDGLYLVNQMTEERGEYGKLVFKFTLNKISDQPTHVAPEDVVMDGRFASSRRKSKGSVAQKHIVRMNDVSNGKEKLPIRVVTPIDHGQMPASFEYMVNMVYGDSDKRLAYPNKSSLIYECGPSCKCSSSCINRVSQCGIQVQLEIFKTEYKGWGVRTRSFIRSGCFVCEFIGEVYQSHNRKARSRPDVDDYILSLGVGKGFIDATNRGNIARFINHSCTPNLCFKDVIYDSNNKSIPHKMLFAVKDIPSGRELSYNYNSCKGKIIKVGNNDCYCGSRECNGQIYI 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi398g00035 496 Gene3D SET domain 271 495 IPR046341 -
Sebi398g00035 496 Pfam SET domain 363 469 IPR001214 GO:0005515
Sebi398g00035 496 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 13 489 - -
Sebi398g00035 496 SMART G9a_1 81 243 IPR003105 -
Sebi398g00035 496 SUPERFAMILY SET domain 270 477 IPR046341 -
Sebi398g00035 496 SUPERFAMILY PUA domain-like 70 247 IPR015947 -
Sebi398g00035 496 Gene3D - 67 256 IPR036987 -
Sebi398g00035 496 ProSiteProfiles Post-SET domain profile. 479 495 IPR003616 -
Sebi398g00035 496 ProSiteProfiles SET domain profile. 352 469 IPR001214 GO:0005515
Sebi398g00035 496 SMART preset_2 277 380 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Sebi398g00035 496 Pfam SAD/SRA domain 85 243 IPR003105 -
Sebi398g00035 496 ProSiteProfiles YDG domain profile. 86 239 IPR003105 -
Sebi398g00035 496 SMART set_7 352 475 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi398g00035 Sebi-Chr398 804346 806022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi398g00035 63 494 Su(var)3-9 homologs AT1G73100 33.400 8.90e-78 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Sebi398g00035 SAD_SRA 1.1e-40 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi398g00035 - - gmx:100807574 537.339