Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi398g00027 ATGGATCGAACGAGACAACTTAATAGTGGTTCAAACAATCAAAACCAAAAAAGCCCTAATCTATCAGTTGGAGGGTCGCATTCTTCAAGTTCTCTCATTGCTGGAAGTGGTCAAAGGTTCCCATATAGGCTTGTTGGGCTAAATATTAATCTTTCTCCTCAAGGGATTAGTGCTAATATTGTTCCCAATAATGGTTTCAATGCTTGTGCTTCTCTTCATGAATCAACTGTTGGGACGGAATTGATCATTCCTTCTTTAAGTAATTCCCTTACTGTAAGCCTTCAAAGGCTTCAAAATAACATTCGTGGATTAGCTCAAACACAAGATAAAGTGATGAACCCCGACATTAATCCAGATGAATCACCACCATATCAGTTTGGAACCAATTCTGCTACATCAACTAATGCAGATAATCACAGTAGGGAACTAAGATATGTGGTGGAAGAACAATGTGAGGATACCAGCATCGCAACAAACACTGTGCGCTTACCGTTCAAGAGAAGTTCTACTAATTCTGGGAGAGAATTCCATATAGGTGAAAGTTCAAACATGGGTTCTCAAGTTGAAATAGCCGAACAACATGTTGGTGCCACTTCCCATGATAATGTGATCAACACATCACCATTAAGCATCGGTCCTACATATGCAAATAGTCAACCAAGAGGCTTTAGAGGTGCAACATCAGTTTCTGAGATGCAAGATGGACAAAGTGAAAGCAATACTAGTCTGCAGACCATACCTGCTGCTACTATTGAACAAGATTTTGTACGTCCCAATCCCGACAGATTTTCAAGCAGCTACACAAGAGGTCTACAAGTTCATTCACTTGGCCATGCACCTTTGGTTTCACAGCTTGAACATCCTCCATTTTTTAACCACATAGAAAATTCAAATGGAGCAAGTTCCTTAAGACAACCAACCGAGATTGATGCTCATACTTTTCTTCGTGACCTAAGTGGTTCCCCTTCGATTACCAATATGAATATAAGGAATCCTATTGCGATAACTATCATCGACAGTTCTCAAATTGGAAGAAATGAAGATGGGCAAAGATCAATGCACATATATGAGATTCATGATGGTGAAAATGATGAACAACCACCACCTCGAGTTCCTAGTATTGCTGAAATGAGAAACGATATAGAGGCTCAGGCTCAAGCTGCTTTGGAACGTTTACACTCTGGTCAAGTTCTACGAGTTCAGGATATGATTGCCCTCAACCATTCACTTGCAATACATATAATTGAGGCCCAGGTTGCTGATGTAGTTGATGATTTTGAGGACATGGAAGTGAGTATGATTCCTGGACTACCAGAGGAGTTAATTATGAAGTACATTAAGATTGAAAATTTTGTGCTGGGAGATAAGGAGAGTCAAGAAGCGTGTTGCATATGTCAGGAAGAATATGCCAACGGAGTAGAAGTTGGAAAGTTGGATTGTGAGCACATATTTCATATTGAGTGCATAAAACAATGGCTCAACCAGAAGAACGAATGTCCCATTTGCAGAAAAAAGGCATTAGAGACTTTCGAATGA 1536 0.3991 MDRTRQLNSGSNNQNQKSPNLSVGGSHSSSSLIAGSGQRFPYRLVGLNINLSPQGISANIVPNNGFNACASLHESTVGTELIIPSLSNSLTVSLQRLQNNIRGLAQTQDKVMNPDINPDESPPYQFGTNSATSTNADNHSRELRYVVEEQCEDTSIATNTVRLPFKRSSTNSGREFHIGESSNMGSQVEIAEQHVGATSHDNVINTSPLSIGPTYANSQPRGFRGATSVSEMQDGQSESNTSLQTIPAATIEQDFVRPNPDRFSSSYTRGLQVHSLGHAPLVSQLEHPPFFNHIENSNGASSLRQPTEIDAHTFLRDLSGSPSITNMNIRNPIAITIIDSSQIGRNEDGQRSMHIYEIHDGENDEQPPPRVPSIAEMRNDIEAQAQAALERLHSGQVLRVQDMIALNHSLAIHIIEAQVADVVDDFEDMEVSMIPGLPEELIMKYIKIENFVLGDKESQEACCICQEEYANGVEVGKLDCEHIFHIECIKQWLNQKNECPICRKKALETFE 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi398g00027 511 ProSiteProfiles Zinc finger RING-type profile. 462 503 IPR001841 -
Sebi398g00027 511 MobiDBLite consensus disorder prediction 1 32 - -
Sebi398g00027 511 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 430 507 IPR013083 -
Sebi398g00027 511 SMART ring_2 462 502 IPR001841 -
Sebi398g00027 511 Pfam Ring finger domain 461 503 IPR001841 -
Sebi398g00027 511 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 41 507 IPR045191 GO:0061630
Sebi398g00027 511 SUPERFAMILY RING/U-box 444 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi398g00027 Sebi-Chr398 573909 578775 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi398g00027 378 509 C3H Transcription Factor Family AT2G15530 32.692 1.33e-19 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi398g00027 - - cam:101502092 121.709