LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi398g00009	ATGGGTTCAGCCACTGCTGGCAATGGGTATATAAGTCTCACGCCAGAGCCACAAAGCAGCAATGCAAGTTCTGTGTCATCTTCCGTAGCCAACAAAGTAGGACGTGTCATGTACCCTCATCCAGTGCATGCTTGGCCAGCAGTTATCTCTACCACCTTCACTCTTAGGATCAGTCCCTTTTCAAGAAACTCAACCAGTTCTGGTGATGGAATGGCACTAGTGTTTGCACAAGATAATAGACCCTCACCAAATGATAGCTATGGCTCATACCTTGGCATGTTTGATAGATCTACACAAGGTGGTGTTTTTAGACAAATAGCTGTGGAGATGGACACTTTCATGAATGAATTTGATCCAGATGGAAACCACATTGGGATAGTCACAACAAGCATCACAAATCCAGTTGCTTCTCAGAGTCTCAACAACACTGGCGTTGACCTCAAAAGTGGAAGAGACATTGAAGTTAAAGTTGATTATAATGGATGGACTAAAATGATTTATGTTTCTGTGGGATACCCTGAAAGCCAATTAAAGAGTGTTCTTAACCATTCAATTACTCTACCTGATATAATTCCAAGCTCAGTTTTTGTTGGTTTCACAGCCTCCACTGGCAAGACTTTTCCTGAAAGCCATCAAGTCCTCAATTGGGTATTCACATCAGTGCCATTGCCAGTTCTTTCTGTTAAAACCCAACATGAGAGGGGTAACAAAAAGGAGGATATAGAAAGCCTATCAAGGACAGTACCAGATAACCCCAAGATGTTCACTTACAAGCAACTTTCAAAGGCCACATGCAACTTCAGGAAAGAAAATCTTTTGGGCAGAGGGGGATTTGGCAGTGTTTATAAAGGCATCATATTAGACTCTGGTAAAATAATAGCAGTAAAGAAGGTTTCAGCAACCTCTAAGCAAGGTGAAAGAGAGTTCTTAGCTGAAATATGTACCATAGGGCGTCTTAGGCACAAAAACTTAGTGCAGCTCCAAGGTTGGTGCAATGAAGGTCAGAATCTTCTTTTGGTTTATGATTATATGCAAAATGGAAGCCTTGACCGGTTCATAGGTAAGGACATTCTGGATTGGCAAACCAGACACAAGATATTGACAGGATTGGCATCAGCATTACTATACCTTCATGAAGAGTGTGGAAACCCTGTAGTTCACAGAGATGTTAAGCCTAACAATGTAATGCTGGATTCTAATTACAATGCTCATTTAGGAGATTTTGGTTTAGCAAGATTACTAAAAAATGAGGACTCAGTTACTACAAACTTAGCTGGAACTCCAGGATATTTGGCCCCTGAAGTAGGCTTTACAGGGAAGGCCACCCCTGAATCAGATGTGTATAGCTTTGGCATGGTTGTACTTGAAGTCATATGTGGGAAAAGGTCAAAATGTATTATGGAAGAGAACAGTTTGGTAGACTATGTGTGGAATTTGCATGCTCAAAATTCATTGCTTGAGTGTGTTGACAAACAACTGAAAAACCAATTTGATGAGGAAGAAGCTAAGAGGGCATTGATGGTTGGATTGGCATGTTTGCATCCAGATTCCATGTTTAGGCCAAGGATGAGAAAAGTGGTGCACATTTTTCTGAATCCAAATGAACCTTTAATGGAATTACCAGGAATGAGACCCACTGGAGTTTATGTATCAGTTTCTTCTTGTACTTCAATCACAGACTTTGGCTCTAGAGGTGAGTTACAGCTCCCATCATCCATAACATCATTGCACAAAAGTTCAATTCCTATGAAGTATGATCAGCAGTGA	1767	0.4086	MGSATAGNGYISLTPEPQSSNASSVSSSVANKVGRVMYPHPVHAWPAVISTTFTLRISPFSRNSTSSGDGMALVFAQDNRPSPNDSYGSYLGMFDRSTQGGVFRQIAVEMDTFMNEFDPDGNHIGIVTTSITNPVASQSLNNTGVDLKSGRDIEVKVDYNGWTKMIYVSVGYPESQLKSVLNHSITLPDIIPSSVFVGFTASTGKTFPESHQVLNWVFTSVPLPVLSVKTQHERGNKKEDIESLSRTVPDNPKMFTYKQLSKATCNFRKENLLGRGGFGSVYKGIILDSGKIIAVKKVSATSKQGEREFLAEICTIGRLRHKNLVQLQGWCNEGQNLLLVYDYMQNGSLDRFIGKDILDWQTRHKILTGLASALLYLHEECGNPVVHRDVKPNNVMLDSNYNAHLGDFGLARLLKNEDSVTTNLAGTPGYLAPEVGFTGKATPESDVYSFGMVVLEVICGKRSKCIMEENSLVDYVWNLHAQNSLLECVDKQLKNQFDEEEAKRALMVGLACLHPDSMFRPRMRKVVHIFLNPNEPLMELPGMRPTGVYVSVSSCTSITDFGSRGELQLPSSITSLHKSSIPMKYDQQ	588

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi398g00009	588	SMART	serkin_6	267	531	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi398g00009	588	Gene3D	Phosphorylase Kinase; domain 1	252	343	-	-
	Sebi398g00009	588	CDD	STKc_IRAK	273	530	-	-
	Sebi398g00009	588	SUPERFAMILY	Protein kinase-like (PK-like)	249	550	IPR011009	-
	Sebi398g00009	588	FunFam	probable L-type lectin-domain containing receptor kinase S.5	344	538	-	-
	Sebi398g00009	588	Pfam	Legume lectin domain	3	221	IPR001220	GO:0030246
	Sebi398g00009	588	FunFam	probable L-type lectin-domain containing receptor kinase S.5	252	343	-	-
	Sebi398g00009	588	PANTHER	-	27	532	-	-
	Sebi398g00009	588	MobiDBLite	consensus disorder prediction	1	26	-	-
	Sebi398g00009	588	CDD	lectin_legume_LecRK_Arcelin_ConA	2	220	IPR001220	GO:0030246
	Sebi398g00009	588	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	385	397	IPR008271	GO:0004672\|GO:0006468
	Sebi398g00009	588	Pfam	Protein kinase domain	268	528	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi398g00009	588	FunFam	Putative L-type lectin-domain containing receptor kinase S.7	1	232	-	-
	Sebi398g00009	588	Gene3D	-	1	234	-	-
	Sebi398g00009	588	ProSiteProfiles	Protein kinase domain profile.	267	531	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi398g00009	588	ProSitePatterns	Protein kinases ATP-binding region signature.	273	297	IPR017441	GO:0005524
	Sebi398g00009	588	Gene3D	Transferase(Phosphotransferase) domain 1	344	536	-	-
	Sebi398g00009	588	SUPERFAMILY	Concanavalin A-like lectins/glucanases	2	221	IPR013320	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi398g00009	Sebi-Chr398	229529	232296	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi398g00009	1	566	Receptor kinase-like Gene Family	AT5G55830	38.615	4.63e-121	371

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Sebi398g00009		Pkinase	6e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi398g00009	-		-	ccaj:109810929	913.294