Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi397g00030 ATGGACAACCCTGACCTTTTCCAATTCCTCACCGCCACCAACAACAACACCATGATGCAACACAGCTTCTGTAGTTCTTCCAATTATTACCCCTTGGAACTCTCCGAAATTACCGATACACCCTCCCACCATGATAGGGCTCTCGCTGCTATGAGAAACCACAAGGAAGCTGAGAAGCGAAGAAGAGAGAGAATCAATTCCCACCTTGACCACCTTCGCACTCTCCTTCCTTGCAATTCCAAGCGTGTTAAGGAGCTGAAGCAGCAAACCTCTGAAATCACTGAACTCGAAACGGTTCCTTCAGAAACCGATGAAATCACCGTCCTCTCCATCAGCGGCGACCATGCCGGCGGTGATGGGAGGCTCATATTCAAGGCTTCTTTGTGCTGTGAGGACCGTTCTGATCTCATCACTGACATCATAGAAATCCTCAAGTCTCTTCATCTGAAAACTCTCAAAGCTGAAATGGCCACGCTTGGAGGAAGGACTCGTAACGTTCTGGTGGTTGCTGCTGATAAAGAACACAGCATTGAATCAATCCATTTCCTTCAGAACTCACTCAAATCCTTGATAGATCGAAACAATTCCAGTGACAGGTCAAAACGACGCCGTGGGTTAGATCGAAGAATGATGGCTTAG 639 0.4742 MDNPDLFQFLTATNNNTMMQHSFCSSSNYYPLELSEITDTPSHHDRALAAMRNHKEAEKRRRERINSHLDHLRTLLPCNSKRVKELKQQTSEITELETVPSETDEITVLSISGDHAGGDGRLIFKASLCCEDRSDLITDIIEILKSLHLKTLKAEMATLGGRTRNVLVVAADKEHSIESIHFLQNSLKSLIDRNNSSDRSKRRRGLDRRMMA 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi397g00030 212 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 49 109 IPR011598 GO:0046983
Sebi397g00030 212 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 44 88 IPR036638 GO:0046983
Sebi397g00030 212 PANTHER TRANSCRIPTION FACTOR BHLH30 33 205 IPR045847 GO:0003700|GO:0006355
Sebi397g00030 212 Gene3D - 44 156 IPR036638 GO:0046983
Sebi397g00030 212 MobiDBLite consensus disorder prediction 193 212 - -
Sebi397g00030 212 MobiDBLite consensus disorder prediction 194 212 - -
Sebi397g00030 212 Pfam Helix-loop-helix DNA-binding domain 53 80 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi397g00030 Sebi-Chr397 827008 827874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi397g00030 9 197 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 58.654 2.49e-65 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi397g00030 HLH 1.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi397g00030 - - gmx:100802566 291.582