LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi397g00027	ATGGGACTCTGTCATGGAAAACCCATTGAAACCTCACACACAGAAGGAGAAAACTCAGTTTTCCCAAGTAACAAACAGGTATTGTCACTACCACCAAGTTCCCACACCACCAAATCACCATCAAAGTTTCCATTTTTCAGCCCTAGTCCCTTGCCAAACCTCTTCAAGAACTCACCAGCGAACTCTAGTGTGAGCTCAACCCCTCTGCGCATCTTCAAGCGTCCCTTTCCTCCTCCTTCGCCGGCCAAGCACATTCGGGCCTTGCTGGCCCGGCGCCATGGCTCAGTGAAGCCCAATGAGGCCACCATCCCTGAAGGGAGTGAGTGTGAGGTTGGGTTGGACAAGAGTTTTGGGTTCTCAAAGCACTTCACGGCTCATTATGAGCTTGGACAAGAAGTGGGGCGTGGCCATTTTGGATACACTTGCTCTGCCAAGGGAAAGAAAGGCAGTTTCAAGGGCCATGATGTTGCTGTCAAAGTCATTCCAAAATCCAAGTTGATTATGAAAATCAATGATGTGGTCTTTGTTCTTATGAATTTGGGCAATGTTTGGCAGATGACAACAGCAATTGCTATAGAGGATGTAAGGAGAGAAGTAAAGATATTGCGAGCTCTAACTGGGCATAAGAATTTGGTGCAGTTCTATGTAGCCTATGAAGATGATGACAATGTTTATATAGTTATGGAGTTATGCAAAGGAGGCGAACTGCTAGATAAGATTCTTTCCAGGGGTGGAAAGTACTCAGAAGAGGATGCCAGAGTTGTTTTGATTCAGATATTAAGTGTGGTAGCTTATTGTCATCTGCAGGGTGTTGTTCACCGTGATCTCAAGCCGGAGAATTTTCTTTTTACTTCTGAAGATGAGAATTCCACGCTGAAGGCCATTGATTTTGGACTGTCTGACTATGTAAAACCAGAGGAGAGGTTGAATGATATTGTTGGAAGTGCATATTATGTTGCTCCTGAAGTTTTGCATAGATCTTATGGGACAGAAGCAGATATGTGGAGCATTGGTGTAATTGCATATATTCTTTTATGTGGAAGTCGACCTTTTTGGGCCAGGACAGAATCTGGCATATTTCGGGCTGTCCTGAAGGCAGATCCAAGTTTTGATGAAGCTCCTTGGCCTTCTTTATCACCTGATGCAAAAGATTTTGTAAAGAGGCTGTTGAATAAGGATTTTCGTAAAAGACTAACAGCAGCTCAGGCTCTCGGTATGGCTCTTGCAAAGACATTAACATTAGTGCAGTTAGCATATCTTAAAGAACAATTTACTCTGTTAGGGCCAAACAAAAATGGGCTAATCTCTATGCAGAACTTCAAGACGGCTATTTTAAGGAGTGCCACTGATGCCTCAAAGGATTCAAGGGTCTTAGATTATGTGAACATGATTAGTTCAATCCAATACCGGAAATTAGATTTCGAGGAATTTTGTGCTGCTGCTATAAGTGTCCATCAACTAGAGGGAATGGACAGCTGGGAGCAACATGCAAGGCGTGCCTATGAGCTGTTTGAAAAGGATGGAAATAGGCCAATCATGATTGAAGAGCTTGCCTCAGAACTTGGGCTTAGTCCATCAGTACCTATTCATGTGGTACTCCAAGATTGGATAAGACACTCAGATGGGAAGCTTAGTTTCTTGGGGTTTGTCAGACTTCTGCACGGAGTTTCTTCGCGTACATTTCAAAAGGCTTGA	1695	0.4366	MGLCHGKPIETSHTEGENSVFPSNKQVLSLPPSSHTTKSPSKFPFFSPSPLPNLFKNSPANSSVSSTPLRIFKRPFPPPSPAKHIRALLARRHGSVKPNEATIPEGSECEVGLDKSFGFSKHFTAHYELGQEVGRGHFGYTCSAKGKKGSFKGHDVAVKVIPKSKLIMKINDVVFVLMNLGNVWQMTTAIAIEDVRREVKILRALTGHKNLVQFYVAYEDDDNVYIVMELCKGGELLDKILSRGGKYSEEDARVVLIQILSVVAYCHLQGVVHRDLKPENFLFTSEDENSTLKAIDFGLSDYVKPEERLNDIVGSAYYVAPEVLHRSYGTEADMWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDEAPWPSLSPDAKDFVKRLLNKDFRKRLTAAQALGMALAKTLTLVQLAYLKEQFTLLGPNKNGLISMQNFKTAILRSATDASKDSRVLDYVNMISSIQYRKLDFEEFCAAAISVHQLEGMDSWEQHARRAYELFEKDGNRPIMIEELASELGLSPSVPIHVVLQDWIRHSDGKLSFLGFVRLLHGVSSRTFQKA	564

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi397g00027	564	FunFam	CDPK-related kinase 1	187	235	-	-
	Sebi397g00027	564	FunFam	CDPK-related kinase 1	410	482	-	-
	Sebi397g00027	564	PANTHER	SERINE/THREONINE-PROTEIN KINASE	113	540	-	-
	Sebi397g00027	564	ProSiteProfiles	Protein kinase domain profile.	127	409	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi397g00027	564	SMART	serkin_6	127	409	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi397g00027	564	Gene3D	-	411	556	-	-
	Sebi397g00027	564	CDD	STKc_CAMK	126	404	-	-
	Sebi397g00027	564	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	271	283	IPR008271	GO:0004672\|GO:0006468
	Sebi397g00027	564	ProSitePatterns	Protein kinases ATP-binding region signature.	133	159	IPR017441	GO:0005524
	Sebi397g00027	564	Gene3D	Phosphorylase Kinase; domain 1	120	235	-	-
	Sebi397g00027	564	FunFam	Calcium-dependent protein kinase SK5	319	410	-	-
	Sebi397g00027	564	SUPERFAMILY	EF-hand	407	555	IPR011992	-
	Sebi397g00027	564	MobiDBLite	consensus disorder prediction	13	42	-	-
	Sebi397g00027	564	MobiDBLite	consensus disorder prediction	1	42	-	-
	Sebi397g00027	564	Gene3D	Transferase(Phosphotransferase) domain 1	236	410	-	-
	Sebi397g00027	564	Pfam	Protein kinase domain	127	404	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi397g00027	564	SUPERFAMILY	Protein kinase-like (PK-like)	120	418	IPR011009	-
	Sebi397g00027	564	FunFam	CDPK-related kinase 3	119	311	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi397g00027	Sebi-Chr397	707373	711783	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi397g00027	1	562	EF-hand Containing Proteins	AT3G50530	61.692	0.0	779

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Sebi397g00027		Pkinase	2e-62	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi397g00027	K13412		-	cave:132162604	909.442