Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi397g00012 ATGCAAATTATCACTATCATCAGAAAGTCACTCGTATGGCTCCCAATTCGCCTTCAAGAAAAGAGTTCAATCCCACAGACGATCAACTCCTCCGATTGTTCCTCTACAAAGGTCCACGGGAAACCTTTACCCAGCAATGTTATCATTCACGAATGTGATTTGTACGGTGATAAAAACCCTTGGGAGATTTGGCAACAATTTGGAGATGGTTCCCACTCATACGGTGGTGGAAAGGATCTCTATTTCTTCACCACACTAAAGAAAAAGTCTCCATCTAGGAGCTCACGTAGTCGACGCTCGGTTCGCACCATTGGCTGTGGTTCTTGGGAAGGTGAAGACACAGGCAAAATCATTGTGGCTAGTGGCACCAACCAACTCCTCGGTATCAAGAAACGGTACCGTTTTGAAAAGAGTGGCACTGACCACGATGGTGGGTGGATCTTGCATGAATACAGCCTTGGCCCATCGATGCTAAGCAATCCTCATGCAATTAATTGGGTTCTATGCAGATTTAGAAAGAATTTGAAAAATGAGAGCGTCATAAGACAAAGGAAGACCATTGTTCTTGCACTTGCTTCTGCTACCGCTGAATCTGTAAGCATCGTAGGCACAGTACACATTATGAGAAATAATGTTCGGCTTGGGGAAGATATTTTCCTCCGAGGACCAAGAAACTATCTAGAGAGTGGAGTTAACAGAACCAGGGTGGTTGAAACTACCACTAAAAGCAAGTCTGAATATAAGGAAGAGTATGTTAATGTCACTATGTTTGGGCCGGAGTCATTTTCCATGGAGTTGAGAGAGTTTGAAGGATGTTTGATCCAAGAGGAAGACATTCCCTTGCTTCCTAATCCATTTTACTTGGACCTATTGTTGGAAATGATTGATATTAAGTACATCAAAAGTAGTAGTAAGTAG 918 0.4281 MQIITIIRKSLVWLPIRLQEKSSIPQTINSSDCSSTKVHGKPLPSNVIIHECDLYGDKNPWEIWQQFGDGSHSYGGGKDLYFFTTLKKKSPSRSSRSRRSVRTIGCGSWEGEDTGKIIVASGTNQLLGIKKRYRFEKSGTDHDGGWILHEYSLGPSMLSNPHAINWVLCRFRKNLKNESVIRQRKTIVLALASATAESVSIVGTVHIMRNNVRLGEDIFLRGPRNYLESGVNRTRVVETTTKSKSEYKEEYVNVTMFGPESFSMELREFEGCLIQEEDIPLLPNPFYLDLLLEMIDIKYIKSSSK 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi397g00012 305 ProSiteProfiles NAC domain profile. 14 174 IPR003441 GO:0003677|GO:0006355
Sebi397g00012 305 SUPERFAMILY NAC domain 36 172 IPR036093 GO:0003677|GO:0006355
Sebi397g00012 305 Gene3D NAC domain 32 178 IPR036093 GO:0003677|GO:0006355
Sebi397g00012 305 PANTHER NAC TRANSCRIPTION FACTOR 56 36 189 - -
Sebi397g00012 305 Pfam No apical meristem (NAM) protein 36 153 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi397g00012 Sebi-Chr397 289974 292034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi397g00012 37 170 NAC Transcription Factor Family AT5G13180 34.028 1.00e-11 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi397g00012 NAM 5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi397g00012 - - tpra:123896066 200.29