Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi397g00001 ATGGGTAGTAGAAGTAGAGCTGTGAACGTTAACACTGAGGATAGTAACAAGGTTGTGAACGGGATGCCAAGCTACGCTCCTCCATTGCCTTCTTCTTCTAGTTCCATGGGCATAGAAGCAACTAATGTTCACCCTTCTCGAATTTCTGAATTTGGAACCCTTGAACAATCTCTTGGATTTCGCATTGAGGATACCATCAATCTCAGCAGAAATCCAGTGTTTAATCAAATGAAATCAAATAGCCAAGCTCTAGGTGCTGATATTCAATTTGGTGCTTTAAGCAAGTCAATTGCAACATCGGATATAAACCTCTCTGCTGCAATTGCTGGGTCCCAGACATTGCCATTACAAAAAGACTCTCAACCAAATCTGGCTTCAACATCCGCTGGCCATCGTGAGAACTGGGGAGAGTCCAACATGGCCGATTCAAGCCCTAGGACTGATACTTCAACAGATGATACAGATGATAAAAATCAAAGGCCTGAAAGGGATGAATCCAGTGAGAGGTCAAAAGATAAAACAGATCAAAAGACATTAAGACGGCTAGCTCAAAATCGTGAGGCTGCCAGAAAAAGCCGACTGAGGAAAAAGGCATATGTGCAACAATTAGAGAGTAGTAGGCTGAAACTGACCCAACTAGAGCAAGAGCTCCAGCGAGCTCGCCAGCAGGGAATATTTATTTCAAGCTCTGGAGATCAGGCCCATTCAATGAGTGGAAATGGTGCTATGGCATTTGATGTAGAATACGCACGATGGTTAGAAGAACATAATAGGCATACCAATGAGCTGAGGGCCGCTATAAATTCTCATGCTGGAGATATTGAACTTCGAACCATTGTTGACAATTTCATGACACAATTTGAAGATATATTCAGGCTGAAAGGTATTGCAGCAAAAGCTGATGTTTTCCACATTCTATCAGGAATGTGGAAGACTCCAGCTGAGAGGTGTTTCATGTGGATTGGAGGCTTTCGCTCATCTGAACTTCTCAAGCTTCTTGTAAGTCAATTGGAGCCTTTAACTGAGCAACAATTGATGGGAATCTACAACTTGCAACAGTCATCCCAACAAGCTGAAGATGCTCTCTCCCAAGGAATGGATGCATTGCAGCAATCACTATCTGAGACACTGGCTAATGGTTCACCCAGCCCATCAGGCTCTTCAGGAAATGTAGCAAACTATATGGGGCAAATGGCTATGGCCATGGGAAAACTTGGTACCCTCGAAGGGTTTCTCCGCCAGGCTGATAATCTGCGGCAGCAAACATTACAACAAATGCTTAGGATATTAACAACCAGGCAATCAGCTCGAGCACTTCTCGCCATAAGCGATTACTTCTCCCGCCTGCGAGCCCTGAGTTCTCTATGGCTTGCCCGGCCAAGGGAATGA 1389 0.4449 MGSRSRAVNVNTEDSNKVVNGMPSYAPPLPSSSSSMGIEATNVHPSRISEFGTLEQSLGFRIEDTINLSRNPVFNQMKSNSQALGADIQFGALSKSIATSDINLSAAIAGSQTLPLQKDSQPNLASTSAGHRENWGESNMADSSPRTDTSTDDTDDKNQRPERDESSERSKDKTDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMSGNGAMAFDVEYARWLEEHNRHTNELRAAINSHAGDIELRTIVDNFMTQFEDIFRLKGIAAKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVSQLEPLTEQQLMGIYNLQQSSQQAEDALSQGMDALQQSLSETLANGSPSPSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi397g00001 462 SUPERFAMILY Leucine zipper domain 177 220 IPR046347 GO:0003700|GO:0006355
Sebi397g00001 462 SMART brlzneu 173 236 IPR004827 GO:0003700|GO:0006355
Sebi397g00001 462 MobiDBLite consensus disorder prediction 148 180 - -
Sebi397g00001 462 ProSiteProfiles DOG1 domain profile. 242 459 IPR025422 GO:0006351|GO:0043565
Sebi397g00001 462 MobiDBLite consensus disorder prediction 1 19 - -
Sebi397g00001 462 PANTHER TRANSCRIPTION FACTOR TGA9 129 462 - -
Sebi397g00001 462 MobiDBLite consensus disorder prediction 115 147 - -
Sebi397g00001 462 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 175 219 IPR004827 GO:0003700|GO:0006355
Sebi397g00001 462 MobiDBLite consensus disorder prediction 115 180 - -
Sebi397g00001 462 Pfam bZIP transcription factor 177 217 IPR004827 GO:0003700|GO:0006355
Sebi397g00001 462 MobiDBLite consensus disorder prediction 1 36 - -
Sebi397g00001 462 CDD bZIP_HBP1b-like 177 229 - -
Sebi397g00001 462 Coils Coil 196 223 - -
Sebi397g00001 462 Gene3D - 176 227 - -
Sebi397g00001 462 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 180 195 IPR004827 GO:0003700|GO:0006355
Sebi397g00001 462 FunFam BZIP family transcription factor 176 225 - -
Sebi397g00001 462 Pfam Seed dormancy control 259 335 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi397g00001 Sebi-Chr397 121351 126711 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi397g00001 140 462 bZIP Transcription Factor Family AT3G12250 75.529 1.10e-175 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Sebi397g00001 DOG1 8.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi397g00001 K14431 - gmx:100780071 770.77