Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi396g00020 ATGGAAGAAATTTCTGATAGTAGGAGTATTTCAGAGACAGAGGAATGGGGGATGGGAGGTCTGCATCTGGGTTCAAAAGGCCCTGTGGTGGGAAAAGAAACTGATAATGTTCAGCAAGTAGAGGGTGTGGAACATACTGGTGGTCCAAATTTATCAGATAATAATGGTGCAACTGGCGAAGCATACAAGTTTTATTTTGAATATGGGTTTGGGATACGAAAGGGTCGTACTTTGAAAAATAATAAAACGTTGGAAGAGTATCAGAAAGAGTTAATGTGCTGTAGAGCTGGGCAGCGCGAAGACCGTGGTCTTAAAATGGAAGATAGGGTCCGTGAGCCTAGAGCATTGACTAGGTGTGATTGTAAGGCCAGATTTCATGTTCGTGTCAATCGGTTTAGTGGTAGGTGGTTCTGTATTTGTTTCGAAGATGAACACAACCATGATCGTCTCGGTGCATTGCATTGCAGCATGCTTCCGGTTTACAGAAAAATGTCTGAGAGTGATGTGGTCCAAATGAACAACATGATGAAAGTTGGTATTCGACCACCAAATATATTTAACACGTTTGCTAACCAGTCTGGGGGTTATGAGAAGATAGGGTTTCGGAAGAAAGACATGTATAACAAGATTAGTGAGCAAAGGCGGAGTTCTTGTTCCGATGCTAAAGGAGCTTTGGAATACCTAGTCAGTGAAACTGGAAGGAGTGGGGAATGGAGGGTATGTTTGTATGACAATAGCAAGGAAATAAAATGTGCATGTCTCAGGATGGAATCTAGAGGGCTACCATGTGAGCATATAGTTTGTGTCTTGGCTCATCTAGGGATTGATGAGATCCCTGAAATATTGGTCCTTAAAAGGTGGAGCAAGGCTGCTAAGGATGGGTTAGGTTGTAAAGAATTTGAAGCAAATCATTGTGTGGACGTTGGCCGTAGGGCTAGGAAGGCTGCACTGGATGGTTTATATGACCATGTTAGTGATTTTAAGTCTGCAAGCATTGAAATGTTTAAGGCTGAACGAGACAGACTTGTCGAGGATTGGAGGCAATGTCGGGCTGATTTTGAAAGCGAACAAAATCTGGGATTAGGTGGTCCTACTTACACACACGATGGTCCAAGGAACCCAACACGTGCTTCAACCAAAGGTCATGCTGTGGCTGTGAAGGGAAAAGGTTGTTTATGGAAGATGCAGTGGTGA 1194 0.433 MEEISDSRSISETEEWGMGGLHLGSKGPVVGKETDNVQQVEGVEHTGGPNLSDNNGATGEAYKFYFEYGFGIRKGRTLKNNKTLEEYQKELMCCRAGQREDRGLKMEDRVREPRALTRCDCKARFHVRVNRFSGRWFCICFEDEHNHDRLGALHCSMLPVYRKMSESDVVQMNNMMKVGIRPPNIFNTFANQSGGYEKIGFRKKDMYNKISEQRRSSCSDAKGALEYLVSETGRSGEWRVCLYDNSKEIKCACLRMESRGLPCEHIVCVLAHLGIDEIPEILVLKRWSKAAKDGLGCKEFEANHCVDVGRRARKAALDGLYDHVSDFKSASIEMFKAERDRLVEDWRQCRADFESEQNLGLGGPTYTHDGPRNPTRASTKGHAVAVKGKGCLWKMQW 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi396g00020 397 ProSiteProfiles Zinc finger SWIM-type profile. 238 274 IPR007527 GO:0008270
Sebi396g00020 397 PANTHER OS01G0519700 PROTEIN 60 228 - -
Sebi396g00020 397 SMART 26again6 249 276 IPR006564 GO:0008270
Sebi396g00020 397 MobiDBLite consensus disorder prediction 1 31 - -
Sebi396g00020 397 Pfam FAR1 DNA-binding domain 67 148 IPR004330 -
Sebi396g00020 397 MobiDBLite consensus disorder prediction 358 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi396g00020 Sebi-Chr396 531120 533936 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Sebi396g00020 FAR1 3e-14 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi396g00020 - - mtr:112420123 170.244