Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi395g00085 ATGTGTGGGGGTGCAATCATTTCTGAATCTGAGGTCGTAGATATGAACCCTAATCCTCCTAACCGTGGCCGGAGATTGACCACCGAGGACCTCTGGACTACGTCTGAGGAGGGTGACACTTTCTCTTACCTTCTTTGTTTCGACGGTACCGCTACCTCTTCTTCAGAAACCTACTTTCACTTCGATCATCCACAGCTCCCTTTTTTTTCAAACAACCACAAAGCTGCAGCTGCAGTGGGGACATGTGATCAGAAGGTGGAGAAGAAGAAAAGAGTGGTGGTTGAGAAGAAGGGTGAGCAGCGGGTTCGGAAGAATTTGTACAGAGGAATCAGACAAAGGCCATGGGGCAAGTGGGCTGCTGAGATTAGAGATCCACGTAAAGGTATAAGGGTCTGGCTTGGCACCTTCAACACTGCCGAAGAAGCCGCCCTCGCTTACGACGCCGCCGCCCTACGCATCCGTGGAAACAAGGCCAGGCTCAACTTTCCACCCAAGATCAAGCGCTGCCTCAACCCAGAGCCCACTCAGCCCACTGGGCCTCCGCCTTGCATTCCCCAGGCCCAGGATCCTGATCAGCTGAAGCAACAAATCTCCACCCTTGAATCATTCCTGGGTTTGGAGCATGAGCCTCAGCCTGAGGTGCAGTGGGACTCACTCTACAGGGACCTGTGGACGCTAGACGACATCGTTATGCCCAACCGTCACCTGTTCTCAAACGGAATTTGA 726 0.5303 MCGGAIISESEVVDMNPNPPNRGRRLTTEDLWTTSEEGDTFSYLLCFDGTATSSSETYFHFDHPQLPFFSNNHKAAAAVGTCDQKVEKKKRVVVEKKGEQRVRKNLYRGIRQRPWGKWAAEIRDPRKGIRVWLGTFNTAEEAALAYDAAALRIRGNKARLNFPPKIKRCLNPEPTQPTGPPPCIPQAQDPDQLKQQISTLESFLGLEHEPQPEVQWDSLYRDLWTLDDIVMPNRHLFSNGI 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi395g00085 241 CDD AP2 107 163 IPR001471 GO:0003700|GO:0006355
Sebi395g00085 241 Gene3D AP2/ERF domain 106 164 IPR036955 GO:0003700|GO:0006355
Sebi395g00085 241 SMART rav1_2 106 169 IPR001471 GO:0003700|GO:0006355
Sebi395g00085 241 ProSiteProfiles AP2/ERF domain profile. 106 163 IPR001471 GO:0003700|GO:0006355
Sebi395g00085 241 SUPERFAMILY DNA-binding domain 106 164 IPR016177 GO:0003677
Sebi395g00085 241 Pfam AP2 domain 107 155 IPR001471 GO:0003700|GO:0006355
Sebi395g00085 241 FunFam Ethylene-responsive transcription factor 2 105 165 - -
Sebi395g00085 241 PRINTS Ethylene responsive element binding protein signature 129 145 IPR001471 GO:0003700|GO:0006355
Sebi395g00085 241 PRINTS Ethylene responsive element binding protein signature 107 118 IPR001471 GO:0003700|GO:0006355
Sebi395g00085 241 PANTHER DNA-BINDING DOMAIN 78 180 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi395g00085 Sebi-Chr395 908237 909430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi395g00085 1 230 AP2-EREBP Transcription Factor Family AT3G16770 39.194 5.37e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi395g00085 AP2 5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi395g00085 K09286 - qsu:112020180 176.407