Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi395g00038 ATGGCCCCTTCTAGGAAATCTAGAAGTGTAAATAAGAAGTTTTCTAATATTCGTGAGGCTGCATCTAGTAAAGATAAGGATGCAGCGAATGCTAGCAAGAATAGACAGAAGGCAAGTGCTGGTATTCAGAAGAAGAGAAAATTGACTGACATGTTAGGGCCACAATGGAGTAAGGAAGAGCTTGAGCAATTCTATGAAGCTTACCGTAAATTTGGGAAAGATTGGAAGAAGGTTGCTCTCGCAGTACGTAGTAGATCTATGGAAATGGTAGAAGCCCTGTACACTGTGAACAGGGCATACTTATCTCTTCCAGAAGGCACTGCTTCTGTTGTTGGACTGATAGCAATGATGACAGATCATTATAGTGTACTGGGAGGAAGTGACAGTGGAAAAGAAAGCAATGAAGATGCAGAAATATCTAAAAAGTCTCAAAAACGTTTACGGAGAAAGCATCTAAATGACAATAAAGCATTAGATGGACACGTTTCAGATCATTCTCAGTCTCATTCTGTTGCATCAGGTGATGGTTGCCTGTCATTGTTGAAGAAGAGGCATTCTGGAATTAAGCCTCATGCTGTTCGAAAAAGAACTCCCCGTGTCCCTATTTCATATTCTATTGGTAGAGATAACGGGGAGAAGTTTTTTTCACCTGCTAGGCAGGGCTCCAAACAAATGGTTGATACTAATGATGTTGCTCATAAGATTGCATTAGCATTGACAGAGGCTTCACAAAGAGGTGGCTCTTCAAAAATTTCTGGATCACCAAACAAGAAAAATATGCCATCACCTGATCTGAAAAATGAGAAGCGTGTTAAATCAGAAAAGGCAGGGGCCAAGTTTTGCAGTTCTGACATGGATGGGGATAGTTCTGAGTTGAGTTTAGGAAGCACAGAAGGTAATAATGGAGAGTATTCTAAAAAAACAATTCATCAGAGAAGTAGAGAAAATACTGGAAGAGGAAGGAACCGGGAAAAGGGAGTAAAACACTATGGGAAGAATTTAGAACCTGAGGAAAACTCAAACAAGCATTTGAGTGACATAAAGGAGGCCTCCAGTGGGACAGATGATGATGAAGGTTCTGCTTTTGATGCCCTGAAAGCTTTGGCTGATCTATCTTTGATGATGCCAGTAACAAACCCTGACACCGAGTCATCTGCACAGGTCAAGGAAGGAAACCATGATGTTGTTGGTGAATCTAAAATGGAAAGACATAATGTATTTCCTAGGATTGATAGCACTACTTCAAGTAAATTGGGCAAGGTTTATTCTGATAATAATGGAGCTGCTGCTACTGAAGCAGAGGGAGCATACCAGCTTAATGCAGGAATCAGGAAAAGAAAACAAAAATCTTCTACCTTAAAAAATGATGAAACACATACTGCTGCTCATTTAAGTGGTTCCCAGAAAACCAAGGTTACTGATGAGGTGAAAAAGTCCATCGTTAAAGGGAAGCGCTCATCAGTTTGTACAGCACACTCAAGACAACTAAAAGTGGTGAAATCCCCGGGAAATATGTCTTCAAATACTAATGACAAAGGGGAAAGAGATGATTCATCATTTTCCCCCATAAAGGTTTTGTCTACTAACCAAGTCAGTCAAGTAAACAGAGGAAGGCCTAGAAGAAAGATGGAAAAACCAAAACCAATGATCCGACGAGATCTGACGGTGTCTGGAAATATCTTTAGTGGTCATAATAAATATTCTAGTGAGAAGGGAATGCTTATCAATTGCCTGTCTTCATATCAAATGCGGCGATGGTGCACTTTTGAGTGGTTTTATAGTGCTATTGATTACCCATGGTTTTCAAAGAAAGAGTTTGTAGAGTATTTAGACCATGTTGGATTGGGTCATGTTCCGAGATTGACTCGTATTGAGTGGGGAGTTATTAGAAGTTCTCTTGGTAGACCACGGAGATTTTCAGAGCAATTTTTGATAGAAGAAAAAAATAAACTTAATCAATACCGGGAATCTGTCAGATCACATTATGCTGAAGTTCTTGCCGGTACCAAGGAAGGCCTTCCTACTGATTTGGCCCAACCATTAATTGTTGGGCAGCGTGTGATTGCTATTCATCCAAAGACAAGAGAGATTCATGATGGAAGTATACTGACTGTAGACCATTGTAGGTACAGGGTTCAGTTTGACCAGCCTGAACTTGGGGTTGAATTTGTCACGGATATTGACTGCATGCCTTTGTATCCATCTGAAAATATGCCCACATCTCTGATAAGAAACAATATCACTCCTGAGAACCTTAATGATCCGAAGCTTAATGGGAAACTGAGACAAAGAAAGATTGCTGAGCACCCGATATTGTCCCCTAGTGAGAATTCAGATAACCTTAAAGGTCTTTATATATCCCCTACTATGCATGGAAGCAGAACTTCATCAAAACAGGGATTTTATTCAGGCTGCAAATCGCAAGCAAAAGTTGTGTTCAGTGAGTTTGGTAGTGCCCAACTAGCATCAAGTTCTCAACCTTCCCTTCTTGAACATGTCCACTCAAAAGATGCTGACATATTAGCAATTTCAGAGTTGGCTCGTGCTCTAGACAAGAAGGAACTTGTCTTGTCTGAACTGAAGCACATGAATGACGGGGTATCAGAAAGCCAGAAATATGGAGACAGCTCAGTGAAGGATTCAGAACCTTTTAAGAGGAATTATGCTTCAGTGTCTTCTGCCTTGTTTTTCTTGAGGCAACGCAACACATATCAAACATGCTCCTCAGTTTTGTCATTAAAGCCCATGGCTAATTTTGATGATCCTGGTGGTCAGGCTAGCTCTTCCAATTGTTCAGCTTGCCACAACCAAGAATCTATATCTCAAAGTCATATAGCTGAAATTGTTGAAAGTTCTAGAAGAAAAGCCCGAACTATGGTTGTTCAAGCTACTCAGGATCAATTGACTGCCAGCACATTAAATCCCTTGGAAAGTTGTCTTGCACAAGATGCTGAACTTAACAATTCATCCAACCAAAATGAAATGAAAATTCCCTCAGAACTCATATCCCATTGTCTAGCCACACTGCTCATGATTCAGTTCAACAAGACCTGTTTTCGCGATGGTACTGAGTGCTCTTTTCCTGTTGAATTGTTATGGGAAGTGACCAATTTATGGTATTCAAATCAATATCCTGGGTAA 3141 0.4034 MAPSRKSRSVNKKFSNIREAASSKDKDAANASKNRQKASAGIQKKRKLTDMLGPQWSKEELEQFYEAYRKFGKDWKKVALAVRSRSMEMVEALYTVNRAYLSLPEGTASVVGLIAMMTDHYSVLGGSDSGKESNEDAEISKKSQKRLRRKHLNDNKALDGHVSDHSQSHSVASGDGCLSLLKKRHSGIKPHAVRKRTPRVPISYSIGRDNGEKFFSPARQGSKQMVDTNDVAHKIALALTEASQRGGSSKISGSPNKKNMPSPDLKNEKRVKSEKAGAKFCSSDMDGDSSELSLGSTEGNNGEYSKKTIHQRSRENTGRGRNREKGVKHYGKNLEPEENSNKHLSDIKEASSGTDDDEGSAFDALKALADLSLMMPVTNPDTESSAQVKEGNHDVVGESKMERHNVFPRIDSTTSSKLGKVYSDNNGAAATEAEGAYQLNAGIRKRKQKSSTLKNDETHTAAHLSGSQKTKVTDEVKKSIVKGKRSSVCTAHSRQLKVVKSPGNMSSNTNDKGERDDSSFSPIKVLSTNQVSQVNRGRPRRKMEKPKPMIRRDLTVSGNIFSGHNKYSSEKGMLINCLSSYQMRRWCTFEWFYSAIDYPWFSKKEFVEYLDHVGLGHVPRLTRIEWGVIRSSLGRPRRFSEQFLIEEKNKLNQYRESVRSHYAEVLAGTKEGLPTDLAQPLIVGQRVIAIHPKTREIHDGSILTVDHCRYRVQFDQPELGVEFVTDIDCMPLYPSENMPTSLIRNNITPENLNDPKLNGKLRQRKIAEHPILSPSENSDNLKGLYISPTMHGSRTSSKQGFYSGCKSQAKVVFSEFGSAQLASSSQPSLLEHVHSKDADILAISELARALDKKELVLSELKHMNDGVSESQKYGDSSVKDSEPFKRNYASVSSALFFLRQRNTYQTCSSVLSLKPMANFDDPGGQASSSNCSACHNQESISQSHIAEIVESSRRKARTMVVQATQDQLTASTLNPLESCLAQDAELNNSSNQNEMKIPSELISHCLATLLMIQFNKTCFRDGTECSFPVELLWEVTNLWYSNQYPG 1046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi395g00038 1046 Pfam DIRP 591 692 IPR033471 -
Sebi395g00038 1046 SMART DIRP_2 592 693 IPR033471 -
Sebi395g00038 1046 MobiDBLite consensus disorder prediction 1 17 - -
Sebi395g00038 1046 MobiDBLite consensus disorder prediction 242 261 - -
Sebi395g00038 1046 MobiDBLite consensus disorder prediction 262 281 - -
Sebi395g00038 1046 MobiDBLite consensus disorder prediction 305 342 - -
Sebi395g00038 1046 MobiDBLite consensus disorder prediction 126 148 - -
Sebi395g00038 1046 SUPERFAMILY Homeodomain-like 52 98 IPR009057 -
Sebi395g00038 1046 MobiDBLite consensus disorder prediction 18 32 - -
Sebi395g00038 1046 MobiDBLite consensus disorder prediction 486 509 - -
Sebi395g00038 1046 MobiDBLite consensus disorder prediction 441 522 - -
Sebi395g00038 1046 MobiDBLite consensus disorder prediction 1 46 - -
Sebi395g00038 1046 Pfam Myb-like DNA-binding domain 55 90 IPR001005 -
Sebi395g00038 1046 CDD SANT 56 90 IPR001005 -
Sebi395g00038 1046 Gene3D - 2 108 - -
Sebi395g00038 1046 ProSiteProfiles SANT domain profile. 51 88 IPR017884 -
Sebi395g00038 1046 PANTHER LIN-9 1 1013 IPR010561 GO:0006351|GO:0017053
Sebi395g00038 1046 SMART sant 52 100 IPR001005 -
Sebi395g00038 1046 MobiDBLite consensus disorder prediction 286 304 - -
Sebi395g00038 1046 MobiDBLite consensus disorder prediction 241 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi395g00038 Sebi-Chr395 410294 423942 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Sebi395g00038 DIRP 7.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi395g00038 - - gmx:100781646 1568.52