Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi395g00034 ATGGAACGGTACGGCCGGGCCAGTGAAGGGTCGCAGTCTGATCCGTCGCCGGAATGGACCGTCGCCGGCGGAGAGACGGGCCTTGAAGAGTCGGTGTGGCAACTGGGATTGGTTGGTGGCGAATCGTACCCTCTTCGACCAGATGAGGCTGATTGTATCTACTATCTGAGAACGGGTTTTGTGGTTATGGCTCACGTGTCGGTTATTGGAGCTGCGAGGACTGGAGGGGGGTATCCAGAACGAGTAGGACAGCCAGTGTGCCAGTATTATATGAGGACGGGATCATGCAAATTTGGTGCATCATGCAAATACCATCATCCCAGGCAAGCTGCAGGCCTACTACTACCCCCTGTCTCGCTAAATTATTATGGATATCCATTGCGAATGGTCCTGCGCCCAAATTATCTAGCATCATCACCAGTTCCCCCCCAGTTTCACTGTGCCTGTGCCGGCTGGGGTCCTTATCAGGCACCTGCAACAAGTCCTGTGCTTCCTTCTAGTACTCCATCGAATGTTGGCTCAACTCAGCTTTATGGGATAAACCAGTTACCTTCATCGGCAACTGCCTATACTGGACCTTATCAACCTTCTGGTTCCTCAATGGGTCCTTCAGGGCAGTAG 621 0.5282 MERYGRASEGSQSDPSPEWTVAGGETGLEESVWQLGLVGGESYPLRPDEADCIYYLRTGFVVMAHVSVIGAARTGGGYPERVGQPVCQYYMRTGSCKFGASCKYHHPRQAAGLLLPPVSLNYYGYPLRMVLRPNYLASSPVPPQFHCACAGWGPYQAPATSPVLPSSTPSNVGSTQLYGINQLPSSATAYTGPYQPSGSSMGPSGQ 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi395g00034 206 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 84 108 IPR000571 GO:0046872
Sebi395g00034 206 Gene3D - 78 149 - -
Sebi395g00034 206 PANTHER PROTEIN PHOSPHATASE RELATED 38 129 - -
Sebi395g00034 206 SMART c3hfinal6 81 108 IPR000571 GO:0046872
Sebi395g00034 206 MobiDBLite consensus disorder prediction 1 23 - -
Sebi395g00034 206 ProSiteProfiles Zinc finger C3H1-type profile. 81 109 IPR000571 GO:0046872
Sebi395g00034 206 SUPERFAMILY CCCH zinc finger 84 109 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi395g00034 Sebi-Chr395 365443 367217 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi395g00034 1 128 C2H2 Transcription Factor Family AT5G18550 57.931 1.90e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sebi395g00034 zf-CCCH 2.5e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi395g00034 - - gmx:100789405 213.772