Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi395g00025 ATGCCACCACTCTCTCAAATCCCACCTTCAACCATTGCTGAAATGGGTAACAAACCCTCCAGAAAGCGTGGTCCAAAATTGGGTGCTCCCAATGCAGAGATCCTTAAGATGGAACGTGATCGAAGGTTGAAGATGGCTCAAATGTTCACTCAGCTTCGGAACTCTGTCCCCGGTGTCTTTCCTCAGGCTACGAGGGAAGTGATTGTAAACGAAACAATTCGTTACATTAAGGACCTTGAGAAGAAGAAGCAAGAGTTGGAGGAGCTCAAGGAGTCAATGAAATCAATAGAAGAGAGGTTGATGCTTCCTTGTGCTAACAGGAATTGCTCCATCACGGTTTCTGTGTCTAGCAATGTTGCCTTCTTTGGAATTCAATCGGTTGCTCAACCTGGTTTAATCACAGTAATTTTGAAGGTGTTCTCTAAGCACCAAGCTGAGATTTTGGCTGCAAATGTCTCAGTTAATCATGGCAAGTTGATATTAGCAATCACAGCGTTAGTGCAAAATGGTGATGGAAATAGTGCCATTGAAAAGATCAAAAGAGAAATTACTAGTTTGTAG 561 0.4278 MPPLSQIPPSTIAEMGNKPSRKRGPKLGAPNAEILKMERDRRLKMAQMFTQLRNSVPGVFPQATREVIVNETIRYIKDLEKKKQELEELKESMKSIEERLMLPCANRNCSITVSVSSNVAFFGIQSVAQPGLITVILKVFSKHQAEILAANVSVNHGKLILAITALVQNGDGNSAIEKIKREITSL 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi395g00025 186 Coils Coil 69 99 - -
Sebi395g00025 186 Pfam Helix-loop-helix DNA-binding domain 36 80 IPR011598 GO:0046983
Sebi395g00025 186 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 29 79 IPR011598 GO:0046983
Sebi395g00025 186 ProSiteProfiles ACT domain profile. 121 186 IPR002912 -
Sebi395g00025 186 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 37 167 IPR044278 GO:0003700|GO:0006355|GO:0009960
Sebi395g00025 186 SMART finulus 35 85 IPR011598 GO:0046983
Sebi395g00025 186 MobiDBLite consensus disorder prediction 1 28 - -
Sebi395g00025 186 Gene3D - 34 106 IPR036638 GO:0046983
Sebi395g00025 186 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 36 94 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi395g00025 Sebi-Chr395 265080 265904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi395g00025 29 87 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 41.667 3.18e-07 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi395g00025 HLH 0.00013 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi395g00025 - - gmx:102670256 212.231