Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi394g00105 ATGGCTTCTCTCTCACCCAGATACACAGCATCATTGGAAGGACACAGGAGCTGCTTGTATGCGATCCCATCAAAAGGGTTTTGCCCAAGCAGGGTCATAGAGGAAGTAAAGGGATTGGGATTTGATCCTTCCAAATTAAATTTTAGCGTAGCATTACTAGCCAAAAGGGCTATAACCAAATCCCAGTGGGATGCCAAAGTTGATGCCTTTAAGACCTGGGGCTGGTCCGAAGATGCAATTTTATATGCATTTAGGAGGCAGCCCAACTTTATGCTACGGTCTACGGACAAGCTCAATGCAGTGATGAGATTTTGGGTTGGCCAGCTTGGTTGGGATCCTTCAGTGCTTCAAGCATCACCAGTACTTTTTGGATTTAGTTTGGAGAAAAGGCTTATTCCAAGGGCTTCAGTTGTTCAGTATCTTCTCTCCAGAGGTTTGATGAAGAAGGGTGCTAGCTTAATTACACCATTTAGTTTGTCTGACAAGCTGTTCCTGCAAAGGTTTGTGAAATATTTTGAGGAGGAAGAAACATCTAGGATACTAAGGATATATCAGGGAGGATGTTAG 567 0.4356 MASLSPRYTASLEGHRSCLYAIPSKGFCPSRVIEEVKGLGFDPSKLNFSVALLAKRAITKSQWDAKVDAFKTWGWSEDAILYAFRRQPNFMLRSTDKLNAVMRFWVGQLGWDPSVLQASPVLFGFSLEKRLIPRASVVQYLLSRGLMKKGASLITPFSLSDKLFLQRFVKYFEEEETSRILRIYQGGC 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi394g00105 188 PANTHER CGI-12 PROTEIN-RELATED 31 173 IPR003690 GO:0003690|GO:0006355
Sebi394g00105 188 Gene3D Transcription termination factor 3, mitochondrial 25 176 IPR038538 -
Sebi394g00105 188 SMART mt_12 81 112 IPR003690 GO:0003690|GO:0006355
Sebi394g00105 188 SMART mt_12 113 147 IPR003690 GO:0003690|GO:0006355
Sebi394g00105 188 Pfam mTERF 62 165 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi394g00105 Sebi-Chr394 1010072 1010934 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Sebi394g00105 mTERF 1.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi394g00105 K15031 - gmx:102666622 192.586