Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi394g00087 ATGCAGAACGAGGAGGGAAAACTCACTGAGCTATATGTTCCAAGGAAATGCTCTGCTACTAACAGACTGATAACTGCAAAGGACCATGCCTCAGTTCAAATTAACATTGGCCATTTGGATGAGAGTGGTGCCTACACTGGTCACTTCTCCACATTTGCTCTATGCGGTTATGTCCGAGCACAGGGAGATGCTGACAGTGCACTAGATCGCTTGTGGCAAAAGAAGAAGGCTGAAGCTAAGCAACATTAG 249 0.4618 MQNEEGKLTELYVPRKCSATNRLITAKDHASVQINIGHLDESGAYTGHFSTFALCGYVRAQGDADSALDRLWQKKKAEAKQH 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi394g00087 82 PIRSF RPS21e 1 82 IPR001931 GO:0003735|GO:0005840|GO:0006412
Sebi394g00087 82 Gene3D - 1 81 IPR038579 -
Sebi394g00087 82 PANTHER 40S RIBOSOMAL PROTEIN S21 1 81 IPR001931 GO:0003735|GO:0005840|GO:0006412
Sebi394g00087 82 FunFam 40S ribosomal protein S21 1 81 - -
Sebi394g00087 82 ProSitePatterns Ribosomal protein S21e signature. 11 19 IPR018279 GO:0003735|GO:0005840|GO:0006412
Sebi394g00087 82 Pfam Ribosomal protein S21e 1 77 IPR001931 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi394g00087 Sebi-Chr394 888721 889582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi394g00087 1 82 Cytoplasmic Ribosomal Protein Gene Family AT5G27700 81.707 1.01e-50 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi394g00087 K02971 - qsu:112023313 154.836