Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi394g00071 ATGGACAACATGAAGAGCAACGAAAGGCAATACAATTACGCCCTCAGCGGCAAGATAATGTTAGTTTCAATTGTCGTCCTCTTTATCGTTATCATCATAATGATTTGCCTTCACGTCCAAATTCGCTGGTACCTTATACATGCACGCCGCCGCCACACTCGCCGACCGCAGTTCGTCTTCTACGTCGACCCCGCCCTCACTGTCGCCTATCGCGGCCTACCTGCCTCCGTCATCTCCTCCCTCCCTGTTTTCACCTTCTCCCCTAACACCCACCCGGAGCCAGTGGATTGTGCGGTTTGTTTATCGGAGTTCGAATACGGGGAAACGGGTCGGGTCCTGCCCAAATGTAAGCACGCCTTCCACATTGACTGCATCGACATGTGGTTCCAGTCTCACTCCACCTGCCCCCTTTGCAGGGCATCCGTGGAGCCTCTACCCGCAGGAGAAACCCGACCCGGAGTGACTGTAACGGAACCGGGTTCGAGTTCCGGGTTGCGCGTGGAGAGCCAGTACGGTGGGGAAGAGTTGAACCGGTCAGGACAGGTGGTTTCTTCTTCTTCGTTGTGCCAGACTATGAAGCCGTCGCCGCTGGTTGGTGTGACGGTTGAGATTCCTAGAAGAAACGACGGGGGCGAGGCGGGTTGTGAGACGCCGTCGTCGTTTCGGTCGCCGATGAGTCGCGTGTTGTCGTTGACGAGAATTCTCAGCAGAGAGAGGAAAGGAAGCGTTTCTCCACCGTCGAGTTGTGAAGCAGGGTGCAGCTCCAAGAACGAGTTAGACGCAGAACGAGGCGGAAGAGATGAGACTCAGTGA 813 0.556 MDNMKSNERQYNYALSGKIMLVSIVVLFIVIIIMICLHVQIRWYLIHARRRHTRRPQFVFYVDPALTVAYRGLPASVISSLPVFTFSPNTHPEPVDCAVCLSEFEYGETGRVLPKCKHAFHIDCIDMWFQSHSTCPLCRASVEPLPAGETRPGVTVTEPGSSSGLRVESQYGGEELNRSGQVVSSSSLCQTMKPSPLVGVTVEIPRRNDGGEAGCETPSSFRSPMSRVLSLTRILSRERKGSVSPPSSCEAGCSSKNELDAERGGRDETQ 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi394g00071 270 FunFam RING-H2 finger protein ATL3 65 144 - -
Sebi394g00071 270 CDD RING-H2_EL5-like 96 139 - -
Sebi394g00071 270 SUPERFAMILY RING/U-box 77 145 - -
Sebi394g00071 270 MobiDBLite consensus disorder prediction 234 270 - -
Sebi394g00071 270 MobiDBLite consensus disorder prediction 256 270 - -
Sebi394g00071 270 SMART ring_2 97 138 IPR001841 -
Sebi394g00071 270 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 24 150 - -
Sebi394g00071 270 ProSiteProfiles Zinc finger RING-type profile. 97 139 IPR001841 -
Sebi394g00071 270 Pfam Ring finger domain 96 139 IPR001841 -
Sebi394g00071 270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 145 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi394g00071 Sebi-Chr394 719534 720346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi394g00071 12 267 Rapid Response to Elicitors AT3G16720 46.416 1.81e-65 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi394g00071 - - qsa:O6P43_003585 285.804