Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi394g00064 ATGTGTGGGGGTGCAATCATTTCTGAATCTGAGGTTGTAGATGTGAACCCTAATCCTCCTAACCGTGGCCGGAGATTGACCACCGAGGACCTCTGGACTACGTCTGAGGAGGGTGACACTTTCTCTTACCTTCTTTGTTTCGACGCAGTGGGGACATGTGATCAGAAGGTGGAGAAGAAGAAAAGAGTGGTGGTTGAGAAGAAGGGTGAGCAGCGGGTTCGGAAGAATTTGTACAGAGGAATCAGACAAAGGCCATGGGGCAAGTGGGCTGCTGAGATTAGGGATCCACGTAAAGGCATAAGGGTCTGGCTTGGCACCTTCAACACTGCCGAAGAAGCCGCCCTCGCTTACGACGGCGCCGCCCTTCGCATCCGCGGAAACAAGGCCAGGCTCAACTTTCCAGCCAAGATCAAGCGCTGCCTCAGCCCAGAGCCCACTCAGCCCACTGGGCCTCCGCCTTGCATTCCCCAGGCCCAGGATCCTGATCAGCTGAAGCAACAAATCTCCACCCTTGAATCATTCCTTGGTTTGGAGCATGAGCAGCCTCAACCTCAGCCTGAGATGCAGTGGGACTCACTCTACAGGGACCTGTGGACGCTAGACGACGTCGTTATGCCCAACCGTCACCTGTTCTGA 636 0.5503 MCGGAIISESEVVDVNPNPPNRGRRLTTEDLWTTSEEGDTFSYLLCFDAVGTCDQKVEKKKRVVVEKKGEQRVRKNLYRGIRQRPWGKWAAEIRDPRKGIRVWLGTFNTAEEAALAYDGAALRIRGNKARLNFPAKIKRCLSPEPTQPTGPPPCIPQAQDPDQLKQQISTLESFLGLEHEQPQPQPEMQWDSLYRDLWTLDDVVMPNRHLF 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi394g00064 211 Gene3D AP2/ERF domain 77 136 IPR036955 GO:0003700|GO:0006355
Sebi394g00064 211 FunFam Ethylene-responsive transcription factor 2 76 135 - -
Sebi394g00064 211 Pfam AP2 domain 78 126 IPR001471 GO:0003700|GO:0006355
Sebi394g00064 211 SMART rav1_2 77 140 IPR001471 GO:0003700|GO:0006355
Sebi394g00064 211 SUPERFAMILY DNA-binding domain 77 135 IPR016177 GO:0003677
Sebi394g00064 211 PRINTS Ethylene responsive element binding protein signature 78 89 IPR001471 GO:0003700|GO:0006355
Sebi394g00064 211 PRINTS Ethylene responsive element binding protein signature 100 116 IPR001471 GO:0003700|GO:0006355
Sebi394g00064 211 CDD AP2 78 135 IPR001471 GO:0003700|GO:0006355
Sebi394g00064 211 ProSiteProfiles AP2/ERF domain profile. 77 134 IPR001471 GO:0003700|GO:0006355
Sebi394g00064 211 PANTHER DNA-BINDING DOMAIN 63 156 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi394g00064 Sebi-Chr394 674435 675695 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi394g00064 1 204 AP2-EREBP Transcription Factor Family AT3G16770 42.169 3.70e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Sebi394g00064 AP2 5.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi394g00064 K09286 - gmx:100779626 159.073