Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi394g00063 ATGTGTGGTGGTGCAATTATTTCTGATTACATAGATGACAACCCCAACCTTGGTTGCCGGAGATTGACCACCGACGACATCTGGTCAGAGCTTCACACTTTCTCTGACCTCCTTGGTTTCGAAGTCGCCTCTTCTTCCCACCACCAATCACCCTTCTCCCACCTTCATCATCCCAACCTCCCTCTAAAACCAAACAACAAAGTGGAGAAGAAAAAAGTGGTGGTAGCAAATAAGGAAAGAGGCAAGAGTGAGGGTGGTAAGTGTAAGCGGGTTCGAAAGAACGTGTACAGAGGAATCAGGCAAAGGCCATGGGGCAAGTGGGCCGCTGAGATAAGGGACCCACACAAGGGTGCACGTGTCTGGCTCGGCACCTTCAACACCGCCGAAGAAGCTGCCCTAGCTTACGACGCTGCCGCTAAGCGCATCCGCCGAGACAAGGCTAAGCTCAACTTTCCAGACAAGAAGCCTTGCCTCACTCAGCCCAGTGGGCCACCCGAGGCCCACGGTGACCAGGATCCTGATCAGCTGAAGCATCAAATCGAATCATTCCTGGGCTTAGAATTAGAGCATGATCAGGCTCAGGCTCATGAGGTGCTTGGTATTGGTGAATGGGACAGCAGGGACCTGTGGACGCTGGACGACATCGTTATGTCCAACCGTCACCTGTTTTCAGGCGGAATTTGA 684 0.5263 MCGGAIISDYIDDNPNLGCRRLTTDDIWSELHTFSDLLGFEVASSSHHQSPFSHLHHPNLPLKPNNKVEKKKVVVANKERGKSEGGKCKRVRKNVYRGIRQRPWGKWAAEIRDPHKGARVWLGTFNTAEEAALAYDAAAKRIRRDKAKLNFPDKKPCLTQPSGPPEAHGDQDPDQLKHQIESFLGLELEHDQAQAHEVLGIGEWDSRDLWTLDDIVMSNRHLFSGGI 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi394g00063 227 MobiDBLite consensus disorder prediction 151 173 - -
Sebi394g00063 227 Gene3D AP2/ERF domain 95 153 IPR036955 GO:0003700|GO:0006355
Sebi394g00063 227 PRINTS Ethylene responsive element binding protein signature 118 134 IPR001471 GO:0003700|GO:0006355
Sebi394g00063 227 PRINTS Ethylene responsive element binding protein signature 96 107 IPR001471 GO:0003700|GO:0006355
Sebi394g00063 227 FunFam Ethylene-responsive transcription factor 2 94 153 - -
Sebi394g00063 227 CDD AP2 96 153 IPR001471 GO:0003700|GO:0006355
Sebi394g00063 227 SMART rav1_2 95 158 IPR001471 GO:0003700|GO:0006355
Sebi394g00063 227 ProSiteProfiles AP2/ERF domain profile. 95 152 IPR001471 GO:0003700|GO:0006355
Sebi394g00063 227 PANTHER DNA-BINDING DOMAIN 72 166 IPR044808 GO:0003700|GO:0009873
Sebi394g00063 227 Pfam AP2 domain 95 143 IPR001471 GO:0003700|GO:0006355
Sebi394g00063 227 SUPERFAMILY DNA-binding domain 95 153 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi394g00063 Sebi-Chr394 658563 660286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi394g00063 1 218 AP2-EREBP Transcription Factor Family AT3G16770 43.985 7.47e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Sebi394g00063 AP2 3.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi394g00063 K09286 - cave:132186034 171.014