Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi394g00037 ATGGAGGAAGCAAGAACCAGATGGCTTCGTCCCAACGAGATTCATGCCATGCTTTGTAATCACAAGTATTTCACAATCAATGTCAAGCCAGTACATTTGCCCAAAAGTGGTACTATTGTATTATTTGACCGCAAGATGCTGAGGAACTTTCGAAAGGATGGGCACAACTGGAAAAAGAAAAAGGATGGAAAAACAGTTAAAGAAGCTCATGAGCATTTAAAGGTTGGTAATGAAGAAAGGATCCACGTATATTATGCACATGGCCAAGATAACTCGAACTTTGTTCGTAGATGTTATTGGCTGCTTGATAAGACTGGTGCTTCTGTAATTCTTGAATGTATGTATTGGAGTCTGGAACACATTGTCCTTGTTCATTACCGTGAAACACAGGAGATGCAAGGTTCTCCTGTGACTCCTGTAAACTCAAACTCCACTTCTGCCTCTGATCCAACTGCACCGTGGATTTTATCAGAAGAAATAGATTCAGGGACCACAACTACATATGCTGGTGGGATTAATGACAATATAACAGTCAAAAACCATGAACTGAGGCTTCATGAGATTAATACACTTGAATGGGATGACCTAGTGGTTGCAAATGATCTTAACACCTCTACTGCGCCTAATGGAGGCAAGGTTCCATATTTTGATCAACAAAATCAAATTTTACTAAATGACAGCCTCAGCAATGTGGCCAGCAATCCATCTGCAGAAATTCCATCTTTTAATAATTTAACTCAGCGAATTGCCGGGAACAACAGTGCTCCTTACAATATTTCAAAAAGTGTTAATCTTCAGACAATGGACAATCAAGTAATACCAAATGAGCAGAGGAATAATCCTGTCTCTTTAAGTGGCGTTGATTCCTTGACCACTTTGGTCAATGACAGATTGCAAAGTCAGGATAGTTTTGGAATGTGGGTGAACCAAATCATGTCCGATTCACCAGGTTCAGTAGATGAGTCGGGTCTTGAATCCTCAGTTTCATCCGTGCATGAACCATATCGGTCCCTGGTAGTGGATAATCAGCAACTTTCTCTGCCAGATCAAGTATTTCATCTCACTGATGTATCCCCCGCATGGGTGTCTTCCACTGAGAAATCAAAGGTCCTGGTGACTGGATTCTTTCATAAGGACTATCAGCACCTCTCAAAGTTCAATCTATTGTGTGTCTGTGGTGATGTAAGCGTTCCAGCAGAAGTTGTTCAGGATGGGGTCTATCGATGCTGGGTATCACCACATTCTCCTGGATTTGTGAATCTCTACTTGAGCTTTGATGGCCACAAGCCTATTAGCCAAGTTGTTAATTTTGAGTATCGTACACCTGTTTTGCATGATCCAGCAGCTTCTATGGAAGAGAAGGACAAGTGGGACGAGTTTCGACTTCAAATGAGGCTTGCTTATTTGCTCTTTGCTAAACAACATAATCTTGATGTTATCTCTAGTAAAGTACCACCTAATAGACTGAAGGAGGCTAGGGAATTTGCCTTAAAAACATCATTTATTTCTAATAGCTGGCAACACTTAATGAAGTCAACTGAAGACAACAAAATTCCATTTTCACAAGCAAAAGAGGCCCTATTTGAAATTGCATTTAAAAACAGACTAAAGGAATGGCTTTTGGAAAGAATTGTTTTAGGTGGCTTGTCGCTGGATTTCCGTGATAAATTTGGATGGACAGCTCTTCATTGGGCAGCATATTGTGGAAGGGAGAAGATGGTTGCAACCCTGTTGTCTGCTGGGGCAAAGCCTAATTTGGTCACAGATCCAACTCCACAAAATTCTGGTGGATGTACTGCTGCTGATCTTGCTTATATGAGGGGTTATGATGGCTTAGCAGCTTATCTTTCAGAAAAGTCTCTTGTTGAGCAGTTCAATGACATGAGCTTAGCTGGAAATGTCAGTGGCTCATTGGAAACTAGCACAACTGATCCAGTAAATTCTGAGAACCTTAGTGAGGACCAGGTGTACCTGAAAGAAACCTTGGCAGCTTACCGAACAGCTGCCGATGCAGCAGCACGCATACAAGCTGCATTTAGGGAGCGCTCCCTAAAATTGCGAACTAAGGCAGTTGAGTTTTGCAGTCCAGAGGCTGAAGCGCGCAAAATAGTTGCAGCAATGAAGATTCAACATGCCTTTCGCAACTTTGAGACAAGGAAAATGATGGCGGCTGCTGCTCGCATTCAGCATACATTCCGTACATGGAAGATTCGTAAAGAATTTCTGAACATGCGCCGCCAGGCTATTAAAATTCAGGCTGCTTTCCGGTGCTTTCAAATGCGGAAGCAATATCGTAAAATTCTATGGTCGGTTAGTGTGGTTGAGAAAGCAGTGCTGCGTTGGCGTTTAAAGAGAAAGGGCTTCCGTGGTCTGCAGCTTAACACTGTGGAAGCAACAGGAGATCAGAATCAGCAAAGTGATACAGAGGAGGAATTCTTTCGAGTTGGTAGGAAACAAGCTGAAGAACGTGTTGAGAGAAGTGTAGTCCGCGTGCAGGCCATGTTCCGTTCTAAGAAAGCACAAGAAGAGTACAGGAGGATGAAGTTGGCCCTTAATCAAGCAAAGTTGGAACGGGAATATGAACAACTCCTCAGTAGTGAAGTTGACATGGAACAGAAGATATAG 2625 0.4244 MEEARTRWLRPNEIHAMLCNHKYFTINVKPVHLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNSNFVRRCYWLLDKTGASVILECMYWSLEHIVLVHYRETQEMQGSPVTPVNSNSTSASDPTAPWILSEEIDSGTTTTYAGGINDNITVKNHELRLHEINTLEWDDLVVANDLNTSTAPNGGKVPYFDQQNQILLNDSLSNVASNPSAEIPSFNNLTQRIAGNNSAPYNISKSVNLQTMDNQVIPNEQRNNPVSLSGVDSLTTLVNDRLQSQDSFGMWVNQIMSDSPGSVDESGLESSVSSVHEPYRSLVVDNQQLSLPDQVFHLTDVSPAWVSSTEKSKVLVTGFFHKDYQHLSKFNLLCVCGDVSVPAEVVQDGVYRCWVSPHSPGFVNLYLSFDGHKPISQVVNFEYRTPVLHDPAASMEEKDKWDEFRLQMRLAYLLFAKQHNLDVISSKVPPNRLKEAREFALKTSFISNSWQHLMKSTEDNKIPFSQAKEALFEIAFKNRLKEWLLERIVLGGLSLDFRDKFGWTALHWAAYCGREKMVATLLSAGAKPNLVTDPTPQNSGGCTAADLAYMRGYDGLAAYLSEKSLVEQFNDMSLAGNVSGSLETSTTDPVNSENLSEDQVYLKETLAAYRTAADAAARIQAAFRERSLKLRTKAVEFCSPEAEARKIVAAMKIQHAFRNFETRKMMAAAARIQHTFRTWKIRKEFLNMRRQAIKIQAAFRCFQMRKQYRKILWSVSVVEKAVLRWRLKRKGFRGLQLNTVEATGDQNQQSDTEEEFFRVGRKQAEERVERSVVRVQAMFRSKKAQEEYRRMKLALNQAKLEREYEQLLSSEVDMEQKI 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi394g00037 874 SUPERFAMILY E set domains 354 440 IPR014756 -
Sebi394g00037 874 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 668 772 IPR027417 -
Sebi394g00037 874 Gene3D - 720 768 - -
Sebi394g00037 874 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 546 - -
Sebi394g00037 874 Pfam CG-1 domain 3 109 IPR005559 GO:0003677
Sebi394g00037 874 ProSiteProfiles Ankyrin repeat region circular profile. 557 585 - -
Sebi394g00037 874 ProSiteProfiles IQ motif profile. 825 853 IPR000048 GO:0005515
Sebi394g00037 874 ProSiteProfiles Ankyrin repeat profile. 557 589 IPR002110 GO:0005515
Sebi394g00037 874 Coils Coil 837 873 - -
Sebi394g00037 874 SMART iq_5 743 765 IPR000048 GO:0005515
Sebi394g00037 874 SMART iq_5 823 845 IPR000048 GO:0005515
Sebi394g00037 874 SMART iq_5 720 742 IPR000048 GO:0005515
Sebi394g00037 874 FunFam Calmodulin-binding transcription activator 5 348 444 - -
Sebi394g00037 874 Gene3D Immunoglobulins 348 443 IPR013783 -
Sebi394g00037 874 ProSiteProfiles CG-1 DNA-binding domain profile. 1 135 IPR005559 GO:0003677
Sebi394g00037 874 SMART ANK_2a 557 586 IPR002110 GO:0005515
Sebi394g00037 874 SMART ANK_2a 596 627 IPR002110 GO:0005515
Sebi394g00037 874 Pfam Ankyrin repeats (3 copies) 517 586 IPR002110 GO:0005515
Sebi394g00037 874 ProSiteProfiles IQ motif profile. 721 750 IPR000048 GO:0005515
Sebi394g00037 874 Pfam IQ calmodulin-binding motif 746 765 IPR000048 GO:0005515
Sebi394g00037 874 Gene3D - 498 626 IPR036770 -
Sebi394g00037 874 SMART CG_1_2 1 130 IPR005559 GO:0003677
Sebi394g00037 874 SUPERFAMILY Ankyrin repeat 526 618 IPR036770 -
Sebi394g00037 874 ProSiteProfiles IQ motif profile. 744 772 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi394g00037 Sebi-Chr394 374977 382965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi394g00037 1 857 CAMTA Transcription Factor Family AT3G16940 52.691 0.0 891
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Sebi394g00037 CG-1 5.8e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi394g00037 K21596 - gmx:100793970 1446.41