Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi394g00014 ATGGGAAGCTCAGGAAGAGAAGAGGTTATGAAGAAGATCCAAGAGCTAGAAGAAGGTCACGCTCACCTCAAGCAAGAAATGTCGAAGCTTAAGCTTTCCGATGGAAGAGGGAAACAGCACCATCGCCAGAGGTCTCACTCGGTGTCACCACAACGTTCCAGATTGGGTGATGGATCAGCTGCGTGGAAGAAAGGCACTTGTTCCTTCAAACAATCATCGCCTCTTCAGAGGGAGAGTCGTGGTGAACCTCAAAATGAAGCAAAAGGAAAAGGTGGTGGCGGTGCTCCTTCCGCTGTCAATTTTACTGAAGGCCAGTATCTCAATATTTTGCAGTCAATGGGACAATCTGTTCATATATTGGATCTTAACTATCGTATAATATACTGGAACCGTAGTGCTGAAAATCTATATGGTTATGCAGCAGAGGAAGCTCTAGGACAGGATGGGATTGAGCTGCTTGTAGACCCTAGAGACTTGACCTTAGCCTATGATACAGTGAACCGTGTCATGATGGGAGAGAGATGGACTGGGCAATTCCCAGTCAAGAATAAGATGGGAGAGAATTTTTTAGCTGTAGCAACTAATACACCTTTTTATGATGATGATGGAAGCTTAGTTGGGGTTATTTGTGTCTCAAGTGATTCACGGCCTTTTCTTGAAATGAGAGTTCCATTCTCAAGTGTAAAGAATGCTGAATCGGATTCAGGTTCCACCCGTCCTAGAAGTAGCATTACAAATAAACTTGGCCTTGACTCTCAACAGCCGCTTCAAGCTGCCCTGGCATCTAAAATTTCAAATTTGGCATCAAAGGTTAGTAATAAAGTTAAGTCAAGAATCTGGATGGGAGAAAATAATGTGGATCGTGAAGGTGGGAGTGGAGAAAGTCATCATTCTGAACATAGTTTATCAGAATCTGTTCTTACAGACCACAGAGAAGATGCTAATTCAAGTGGAGCTAGCACACCAAGAGGTGATTTGCCACAGTCCCCTTTTGGTGTATATGAGACTGAAGGAAAACCTATACACAAAAGCATACCCTCTAAGGCTGAAGCCTGGATTCAGAAGAAAACATTGTCATGGCCATGGAGGACAAATGAACGAGAAAAATCGGAGGCAAGGAACGTTTATGTTGCTGGGTCATGGAGGCAGAATGATCAAGGAAATGAGTCAGCTAATCAGAAGATTGTTTCTTCAGGTTTGAAGCAGGAAAGCAAGACAGGTGAAGGTAATCGCCCTGTTAACAATGAGGCTTCTGGATCCTGGTCCTCCTCCTTTAATGTTAACAGCACAAGTAGTGCCAGCAGTTGTGGGAGTGCTGGCAGCTGTGCTGTCAATAATAAAACTGATGTGGACACTGATTGCTTGGATTATGAAATTTTGTGGGAGGACCTGACAATTGGAGAACAAATTGGACAAGGTTCTTGTGGAACTGTATATCATGCTCTGTGGTATGGATCAGATGTTGCCGTCAAGGTTTTCTCAAAGCAAGAATATTCAGAGGATGTGATACTGTCCTTCAAACAAGAGGTGTCTGTCATGAAAAGACTTCGACATCCAAATATTCTTCTTTTTATGGGGGCAGTGACTTCACCTCAACGGCTCTGCATTGTGACCGAGTTTCTCCCACGGGGAAGCTTGTGTCGCTTGTTACACAGAAACACACCCAAACTTGACTGGAGACGGCGAGTTCATATGGCCTTGGATATTGCACGAGGCATAAATTATCTTCATCATTGTAACCCACCTATCATCCATAGAGATTTGAAGTCTTCAAATCTTTTAGTTGATAAGAACTGGACTGTGAAGGTTGGTGATTTTGGTCTTTCGCGTCTTAAGCATGAAACATATCTCACAACTAAGACAGGGAGGGGCACGCCTCAATGGATGGCACCAGAAGTTCTTCGTAATGAACCATCAGATGAGAAGTCTGATGTATACAGCTTTGGGGTGATATTATGGGAACTTGCAACTGAAAAGATCCCTTGGGACAATCTCAACTCAGTGCAGGTGATTGGAGCTGTAGGGTTCATGAATCAGCGGCTAGAAATTCCAAAAGATGTTGATCCACGGTGGGCTTCTATAATTGAGAGCTGCTGGCATAGTGATCCAACTCTCAGACCAACATTCCGGGAACTGCTTGAAAGGCTTAGAGAGCTGCAAAAACGATATGCCATTCAATTCCAGGCAGCCCGATCTGCTGGCGGGGAAAGCACCCAAAAGGAGTCCTAG 2229 0.4415 MGSSGREEVMKKIQELEEGHAHLKQEMSKLKLSDGRGKQHHRQRSHSVSPQRSRLGDGSAAWKKGTCSFKQSSPLQRESRGEPQNEAKGKGGGGAPSAVNFTEGQYLNILQSMGQSVHILDLNYRIIYWNRSAENLYGYAAEEALGQDGIELLVDPRDLTLAYDTVNRVMMGERWTGQFPVKNKMGENFLAVATNTPFYDDDGSLVGVICVSSDSRPFLEMRVPFSSVKNAESDSGSTRPRSSITNKLGLDSQQPLQAALASKISNLASKVSNKVKSRIWMGENNVDREGGSGESHHSEHSLSESVLTDHREDANSSGASTPRGDLPQSPFGVYETEGKPIHKSIPSKAEAWIQKKTLSWPWRTNEREKSEARNVYVAGSWRQNDQGNESANQKIVSSGLKQESKTGEGNRPVNNEASGSWSSSFNVNSTSSASSCGSAGSCAVNNKTDVDTDCLDYEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSEDVILSFKQEVSVMKRLRHPNILLFMGAVTSPQRLCIVTEFLPRGSLCRLLHRNTPKLDWRRRVHMALDIARGINYLHHCNPPIIHRDLKSSNLLVDKNWTVKVGDFGLSRLKHETYLTTKTGRGTPQWMAPEVLRNEPSDEKSDVYSFGVILWELATEKIPWDNLNSVQVIGAVGFMNQRLEIPKDVDPRWASIIESCWHSDPTLRPTFRELLERLRELQKRYAIQFQAARSAGGESTQKES 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi394g00014 742 MobiDBLite consensus disorder prediction 383 424 - -
Sebi394g00014 742 Pfam PAS fold 105 212 IPR013767 GO:0006355
Sebi394g00014 742 PRINTS Tyrosine kinase catalytic domain signature 577 595 IPR001245 GO:0004672|GO:0006468
Sebi394g00014 742 PRINTS Tyrosine kinase catalytic domain signature 643 665 IPR001245 GO:0004672|GO:0006468
Sebi394g00014 742 PRINTS Tyrosine kinase catalytic domain signature 687 709 IPR001245 GO:0004672|GO:0006468
Sebi394g00014 742 PRINTS Tyrosine kinase catalytic domain signature 624 634 IPR001245 GO:0004672|GO:0006468
Sebi394g00014 742 PRINTS Tyrosine kinase catalytic domain signature 538 551 IPR001245 GO:0004672|GO:0006468
Sebi394g00014 742 SMART pas_2 104 171 IPR000014 -
Sebi394g00014 742 MobiDBLite consensus disorder prediction 229 250 - -
Sebi394g00014 742 ProSiteProfiles PAS repeat profile. 102 173 IPR000014 -
Sebi394g00014 742 FunFam PAS domain-containing protein tyrosine kinase 457 541 - -
Sebi394g00014 742 SUPERFAMILY Protein kinase-like (PK-like) 453 716 IPR011009 -
Sebi394g00014 742 SMART serkin_6 464 724 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi394g00014 742 MobiDBLite consensus disorder prediction 289 311 - -
Sebi394g00014 742 CDD STKc_MAP3K-like 470 709 - -
Sebi394g00014 742 Gene3D Transferase(Phosphotransferase) domain 1 543 729 - -
Sebi394g00014 742 CDD PAS 113 214 IPR000014 -
Sebi394g00014 742 MobiDBLite consensus disorder prediction 65 80 - -
Sebi394g00014 742 SUPERFAMILY PYP-like sensor domain (PAS domain) 108 211 IPR035965 -
Sebi394g00014 742 ProSitePatterns Serine/Threonine protein kinases active-site signature. 583 595 IPR008271 GO:0004672|GO:0006468
Sebi394g00014 742 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 225 722 - -
Sebi394g00014 742 NCBIfam PAS domain S-box protein 103 214 IPR000014 -
Sebi394g00014 742 Coils Coil 6 33 - -
Sebi394g00014 742 ProSiteProfiles Protein kinase domain profile. 464 719 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi394g00014 742 MobiDBLite consensus disorder prediction 1 97 - -
Sebi394g00014 742 FunFam PAS domain-containing protein tyrosine kinase family protein 542 733 - -
Sebi394g00014 742 Gene3D PAS domain 114 217 - -
Sebi394g00014 742 Pfam Protein tyrosine and serine/threonine kinase 464 716 IPR001245 GO:0004672|GO:0006468
Sebi394g00014 742 Gene3D Phosphorylase Kinase; domain 1 457 541 - -
Sebi394g00014 742 MobiDBLite consensus disorder prediction 284 334 - -
Sebi394g00014 742 MobiDBLite consensus disorder prediction 8 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi394g00014 Sebi-Chr394 161598 167833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi394g00014 7 733 MAP Kinase Kinase Kinase AT3G06620 61.730 0.0 937
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Sebi394g00014 PK_Tyr_Ser-Thr 3.3e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi394g00014 - - gmx:100800867 1190.25