Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi394g00009 ATGCTTCATGCATTGATGAATCTTCTCTCTTTGTGTTTGAAGCCATTTGGGCGTGATGCTGATAAATTCGAGTCTGTTGGAGTTATTGGAAGCAGTTTTGGTGGCAGAGAAGGCAAAGATGGCTTGCTCTGGTTCCGAGATGTCGGAAAATATGGCTCCGGTGAATTCTCGATGGCAGTGGTGCAGGCGAACCAGGTTATCGAAGACCAGAGCCAGATCGAGTCTGGTCCTCTCGGCACCTTCGTCGGTATATACGATGGTCACGGAGGACCAGACGCATCGAGATACATATGCGATCACTTGTTTCGCCATTTTCAAGCAATATCGGCTGAGTCACACGGAATGGTGACAAGTGAGACAATTGAAAGGGCATTCCGCCAAACAGAAGATGGGTACACTGCCCTTGTGTCAGACTTATGGAATACTAGACCTCAAATTGCAAGTGCTGGGTCCTGTTGTCTGGTTGGAGTGATATTTCAGCAGACACTCTTTGTCGCAAACGTTGGAGATTCCCGTGTTGTATTGGGTAAGAAGGTTGGCAACACAGGTGGTATTGCTGCAATTCAGCTGTCTACAGAACACAATGCAAATATTGAGGCTATTAGGCAGGAGCTGAGAGAATTACACCCTCATGATCCACAAATCGTTGTCCTCAAACATGGAGTGTGGAGAGTAAAAGGCATTATTCAGGTTTCTAGATCTATAGGTGACGTATATATGAAAAATGCGCAGTTTAACCGCGAACCACTTAATCCAAAATTCAGACTTCCTGAACCAATGAACATGCCTATCTTGTCTGCTAGTCCCACTATTATTTCTCATTCTCTCCAACCAAATGATTCTTTCCTTATATTTGCATCAGATGGTTTATGGGAGCATCTAAGTAATGAAAAGGCTGTGGAAATTGTCAACAGCAATCCACATGCGGGTAGTGCCAAGAGGCTTATCAAGGCTGCCCTCCACGAAGCGGCAAGAAAACGAGAAATGCGATATTCAGATCTCCGTAAGATTGACAAGAAGGTTCGACGCCATTTTCATGATGATATATCTGTTATTGTTTTATTCTTAAATCACGACCTTATATCCAGAGGCACAGTGCAAGACCCAGCACTTTCACTTCGAAGCGCTCTCGATCATTGA 1140 0.4456 MLHALMNLLSLCLKPFGRDADKFESVGVIGSSFGGREGKDGLLWFRDVGKYGSGEFSMAVVQANQVIEDQSQIESGPLGTFVGIYDGHGGPDASRYICDHLFRHFQAISAESHGMVTSETIERAFRQTEDGYTALVSDLWNTRPQIASAGSCCLVGVIFQQTLFVANVGDSRVVLGKKVGNTGGIAAIQLSTEHNANIEAIRQELRELHPHDPQIVVLKHGVWRVKGIIQVSRSIGDVYMKNAQFNREPLNPKFRLPEPMNMPILSASPTIISHSLQPNDSFLIFASDGLWEHLSNEKAVEIVNSNPHAGSAKRLIKAALHEAARKREMRYSDLRKIDKKVRRHFHDDISVIVLFLNHDLISRGTVQDPALSLRSALDH 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi394g00009 379 Gene3D - 47 367 IPR036457 -
Sebi394g00009 379 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169
Sebi394g00009 379 SUPERFAMILY PP2C-like 64 357 IPR036457 -
Sebi394g00009 379 ProSiteProfiles PPM-type phosphatase domain profile. 52 356 IPR001932 -
Sebi394g00009 379 Pfam Protein phosphatase 2C 79 326 IPR001932 -
Sebi394g00009 379 PANTHER PROTEIN PHOSPHATASE 53 354 IPR015655 GO:0004722|GO:0006470
Sebi394g00009 379 FunFam Probable protein phosphatase 2C 42 46 364 - -
Sebi394g00009 379 SMART PP2C_4 42 354 IPR001932 -
Sebi394g00009 379 CDD PP2Cc 56 356 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi394g00009 Sebi-Chr394 118559 122740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi394g00009 1 376 PP2C-type Phosphatase Gene Family AT4G38520 58.442 1.95e-159 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi394g00009 K01102 - gmx:100790813 688.337