Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi394g00004 ATGGCGAATTCTCTCTCATTTCCGAAAGAGATTCTGAACATGAGCATCAACACCAACGACAGCTTCGCAAGCTCCAACGTCGTAGATTGCTCTGAGGTACTCAACAACACTCCAGCCACACCGAACTTCTTCTCCATTACGTCATCGCCGAATGAAGCTGCCGTCGGAGGAAACAAATCACCTGAAGCGGAGAACGACGGAGAAAAAAATGCAGATGCAGAGAAAGGAGACGAAAATCAAATTCGTGATGAGATCACCAACAAACAGGTGAAAGAAAAGAAGAATAAGAGCCCAACGAAGAAGGGTAGATTTGCTTTCAAGACAAAGAGCGAAGTGGATCACTTAGACGATGGGTATAGGTGGCGCAAATACGGCCAGAAAGCTGTGAAAAACAGCCCCTATCCAAGGAGTTACTACCGTTGCACCGCTGATGGTTGTGGCGTGAAGAAGCGAGTGGAGCGATCCTATGAGGACCCGTCCACCGTGGTCACCACCTATGACGACAACCACACCCACCCCTGCCCGGTCTTGTCCAACCATCGTTCCAGGCTCGGCTACCGAGCCTATGGCTCGGGTAGGGGTAATGCTACTGCTGCTAATTCTGTTGGATTTAGTTCTTCAACTTGCCTAGTGCTGGAGCAACAGCGCCAACAATTTCAGAACCTGCAGAATAATATTGTTCAATATCGTGCCATTGCGGCGTCGTTTAGTAGCAGCAACAGCTTCCTTCAGAATCACAACCAAGGTGGTAGTTTTGTGTCATCTACATGGATGAGTGATGCTCCTCGTCAGGGTTTGTTACCAGCTGGCAATGGGCTTCTTCAGGACATTATCATGTCAGCCCAGATGCAACGAGGACAAGGAATTAACTGA 873 0.4868 MANSLSFPKEILNMSINTNDSFASSNVVDCSEVLNNTPATPNFFSITSSPNEAAVGGNKSPEAENDGEKNADAEKGDENQIRDEITNKQVKEKKNKSPTKKGRFAFKTKSEVDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTADGCGVKKRVERSYEDPSTVVTTYDDNHTHPCPVLSNHRSRLGYRAYGSGRGNATAANSVGFSSSTCLVLEQQRQQFQNLQNNIVQYRAIAASFSSSNSFLQNHNQGGSFVSSTWMSDAPRQGLLPAGNGLLQDIIMSAQMQRGQGIN 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi394g00004 290 Pfam WRKY DNA -binding domain 116 173 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sebi394g00004 290 Coils Coil 212 232 - -
Sebi394g00004 290 ProSiteProfiles WRKY domain profile. 110 175 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sebi394g00004 290 SMART WRKY_cls 115 174 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sebi394g00004 290 MobiDBLite consensus disorder prediction 44 102 - -
Sebi394g00004 290 MobiDBLite consensus disorder prediction 62 93 - -
Sebi394g00004 290 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 36 213 IPR044810 GO:0003700
Sebi394g00004 290 FunFam WRKY transcription factor 57 101 175 - -
Sebi394g00004 290 Gene3D WRKY domain 99 176 IPR036576 GO:0003700|GO:0006355|GO:0043565
Sebi394g00004 290 SUPERFAMILY WRKY DNA-binding domain 108 175 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi394g00004 Sebi-Chr394 42586 44187 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi394g00004 30 284 WRKY Transcription Factor Family AT2G47260 41.473 1.22e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Sebi394g00004 WRKY 5.1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi394g00004 - - gmx:100127422 211.075