Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi394g00001 ATGGGAATTAGGGTGAAAGAAAAGAAGATGAAGAGCCCGACGAAGAAAGGTAGATTTGCTTTCAAGACAAAGAGCGAAGTGGATCACTTAGACGATGGGTATAGATGGCGCAAATATGGCCAAAAAGCTGTGAAAAACAGCCCCTATCCAAGGAGTTACTACCGTTGCACCGCTGATGGTTGTGGCGTGAAGAAGCGAGTGGAGCGATCCTATGAGGACCCGTCCACCGTGGTCACCACTTATGACGGCAACCACACCCACCCCTGCCCGAACTTGTCCAAACATCGTTCTAGCCTCGGCTACCGAGCCTATGGCTCGGGTAGGGGTAATGCCACTGCTGCTAATTCTGTTGGATTTAGTTCTTCAACTCGCCCGGTGCTGGAGCAACAACGCCGGCAATTTCAGAACCTGCAGAATAATGATGTTCAATATCGTGCCAATGCGTCGTCGTTTAGTAGCAGCAGCAGCTTCCTTCAGGATCACAACCAAGGTGGTAGTTTTGTGCCATCTACATGGATGAGTGTTGCTCCTCGTCAAGGTTTGTTACCAGCTGGCAATGGGCTTCTTGAGGACATTATCATGTCAGCCCAGATGCAACGAGGACAAGGAATTAACTAA 618 0.4951 MGIRVKEKKMKSPTKKGRFAFKTKSEVDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTADGCGVKKRVERSYEDPSTVVTTYDGNHTHPCPNLSKHRSSLGYRAYGSGRGNATAANSVGFSSSTRPVLEQQRRQFQNLQNNDVQYRANASSFSSSSSFLQDHNQGGSFVPSTWMSVAPRQGLLPAGNGLLEDIIMSAQMQRGQGIN 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi394g00001 205 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 9 135 IPR044810 GO:0003700
Sebi394g00001 205 Coils Coil 127 147 - -
Sebi394g00001 205 ProSiteProfiles WRKY domain profile. 25 90 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sebi394g00001 205 Gene3D WRKY domain 15 91 IPR036576 GO:0003700|GO:0006355|GO:0043565
Sebi394g00001 205 FunFam WRKY transcription factor 57 16 90 - -
Sebi394g00001 205 SUPERFAMILY WRKY DNA-binding domain 23 90 IPR036576 GO:0003700|GO:0006355|GO:0043565
Sebi394g00001 205 SMART WRKY_cls 30 89 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sebi394g00001 205 Pfam WRKY DNA -binding domain 31 88 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi394g00001 Sebi-Chr394 8390 9111 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi394g00001 15 118 WRKY Transcription Factor Family AT2G47260 64.423 1.04e-40 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Sebi394g00001 WRKY 4.2e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi394g00001 - - gmx:100127422 165.622