Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi393g00021 ATGGCTCCTGCCACCTCATCCGCGGTGTCGCACAGGATCGTCGGCTTCAATCGTCGCACGCATGTGCCGCGCCATCCACAACGGCCGTATGCGCCGCCGATTAAGAAGTACAGGTCGATGGCGGACATAATGGAGAGGGCGCGCTATGCTGTGGTGGAACGTGAGGATTATAGCGGCCTGACCTGCGACCAATGTCGATCCGGTGAGAGGGCGGAGGAGCTGCTTTTGTGCGACAAATGCGACAAAGGCTTCCACATGAAATGTGTGAGGCCCATCGTCGTGAGGGTACCTGATGGATCTTGGCTTTGCCCTAAGTGTTCGAGAGGGAAGAGAATGAGAAGTTTCTCTCAGAAGAAGATAACTAATTTCTTCGGGATTGACAATGATTCTTCTAACTTTAAGAACAAAGGTTCTTCTTTTGAGGGTAATGTGCTGAAATTCAGAAATATTTATGTATAA 459 0.5011 MAPATSSAVSHRIVGFNRRTHVPRHPQRPYAPPIKKYRSMADIMERARYAVVEREDYSGLTCDQCRSGERAEELLLCDKCDKGFHMKCVRPIVVRVPDGSWLCPKCSRGKRMRSFSQKKITNFFGIDNDSSNFKNKGSSFEGNVLKFRNIYV 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi393g00021 152 ProSitePatterns Zinc finger PHD-type signature. 62 106 IPR019786 -
Sebi393g00021 152 ProSiteProfiles Zinc finger PHD-type profile. 59 109 IPR019787 -
Sebi393g00021 152 PANTHER TRANSCRIPTION INTERMEDIARY FACTOR 61 107 - -
Sebi393g00021 152 SUPERFAMILY FYVE/PHD zinc finger 52 112 IPR011011 -
Sebi393g00021 152 SMART PHD_3 61 107 IPR001965 -
Sebi393g00021 152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 122 IPR013083 -
Sebi393g00021 152 Pfam PHD-finger 62 108 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi393g00021 Sebi-Chr393 298871 299451 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi393g00021 29 112 C2H2 Transcription Factor Family AT3G01460 31.183 1.20e-11 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sebi393g00021 PHD 7.2e-12 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi393g00021 K24406 - gmx:100808815 181.8