Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi393g00016 ATGGCTCCTGCCACCTCATCCGCGATGTCGCACAGGCTCGTCGGCTTCAACCGTCGCACGCATGCGCCGCGCCATCCACAGCGGTCGTATGCGCCACCGAATAAGAAGTACAGGTCGATGACGGACATAATGGAGAGGGCGCGCAATGCTGTGGTGGAACGTGAGGATTATAGCGGCCTGACCTGCGACCAATGCCGATCCGGTGAGAGGGCGGAGGAGCTGCTTTTGTGCGACAAATGCGACAAAGGCTTCCACATGAAATGTTTGAGGCCCATCGTCGTGAGGGTACCAGATGGATCTTGGCTTTGCCCTAAGTTTCTCTCAGAAGAAGATAACTAA 339 0.5605 MAPATSSAMSHRLVGFNRRTHAPRHPQRSYAPPNKKYRSMTDIMERARNAVVEREDYSGLTCDQCRSGERAEELLLCDKCDKGFHMKCLRPIVVRVPDGSWLCPKFLSEEDN 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi393g00016 112 SUPERFAMILY FYVE/PHD zinc finger 26 106 IPR011011 -
Sebi393g00016 112 SMART PHD_3 61 107 IPR001965 -
Sebi393g00016 112 PANTHER TRANSCRIPTION INTERMEDIARY FACTOR 61 110 - -
Sebi393g00016 112 Pfam PHD-finger 62 105 IPR019787 -
Sebi393g00016 112 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 112 IPR013083 -
Sebi393g00016 112 ProSiteProfiles Zinc finger PHD-type profile. 59 109 IPR019787 -
Sebi393g00016 112 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi393g00016 Sebi-Chr393 228372 228846 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi393g00016 61 104 C2H2 Transcription Factor Family AT3G01460 43.182 1.00e-09 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sebi393g00016 PHD 1.3e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi393g00016 K24406 - qsa:O6P43_023354 155.221