Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi392g00058 ATGGAGGATCTCCCACCTGGTTTTCGTTTCTACCCAACAGAAGAGGAGCTAGTTGGCTTCTATCTACACAACCAGCTTGAAGGGCAACAACACCACATCAACAGAGTTATCCCAGTCATTGATATCAATGGCGTAGAGCCCTGGAACCTTCCATCACTTGCAGGGGAGCTGTGTCGTGGTGACACGGAGCAATGGTTTTTCTTTTCACCAAGACAAGAGAGAGAGGCCAGGGGAGGCAGACCCAACAGAACCACAGGTAGTGGGTATTGGAAGGCCACGGGTTCTCCTGGTCACGTTTACTCTGCTGATAACAGAGTCATTGGGATGAAGAAAACCATGGTGTTTTACAATGGAAAAGCTCCTAGTGGAAAGAAAACCAAATGGAAGATGCATGAATACAAAGCCATTCAACACACCAATAACCAATCCAACCCGGCCACTCCAAAGTTGAGGCACGAATTCAGCTTGTGTCGTGTTTATGTCATATCGGGAAGCTTTCGGTCATTTGATAGACGTCCATTAGAGAGGCCAAGAGTGGGATTAAGACAGCTTGATGCTGCAGCTTCAACAAGTGCTCATCAGCAGGTAGCAGCAGAGGTTGATGGATCAAGCTCCTCTGAAACTTCTCACTCTGGTGGAGGAGGAGGAGACCAATGTGATGGTGCTCAGGCTGGAGGGTCAAGTGGCACAAATTGGAATGTTGCACATAATGAGGTTGAAGGACCTCTTTGGGAATTAGAGCAACTTGATTGGCTCTAA 759 0.4769 MEDLPPGFRFYPTEEELVGFYLHNQLEGQQHHINRVIPVIDINGVEPWNLPSLAGELCRGDTEQWFFFSPRQEREARGGRPNRTTGSGYWKATGSPGHVYSADNRVIGMKKTMVFYNGKAPSGKKTKWKMHEYKAIQHTNNQSNPATPKLRHEFSLCRVYVISGSFRSFDRRPLERPRVGLRQLDAAASTSAHQQVAAEVDGSSSSETSHSGGGGGDQCDGAQAGGSSGTNWNVAHNEVEGPLWELEQLDWL 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi392g00058 252 MobiDBLite consensus disorder prediction 186 234 - -
Sebi392g00058 252 ProSiteProfiles NAC domain profile. 4 162 IPR003441 GO:0003677|GO:0006355
Sebi392g00058 252 SUPERFAMILY NAC domain 3 160 IPR036093 GO:0003677|GO:0006355
Sebi392g00058 252 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 188 - -
Sebi392g00058 252 Pfam No apical meristem (NAM) protein 5 134 IPR003441 GO:0003677|GO:0006355
Sebi392g00058 252 Gene3D NAC domain 13 165 IPR036093 GO:0003677|GO:0006355
Sebi392g00058 252 MobiDBLite consensus disorder prediction 187 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi392g00058 Sebi-Chr392 780042 781134 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi392g00058 2 251 NAC Transcription Factor Family AT3G44350 54.800 1.77e-91 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi392g00058 NAM 1.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi392g00058 - - gmx:100780264 379.407