Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi392g00045 ATGATGGAAGGGGTTTCAAGGGAAGCCCAGATGTCGATTGCAGCTTCGTCCATGTTTCCTGGGTTCAGGTTTTGCCCCACCGACGAAGAGTTGATTTCATATTACCTCAGGAAGAAATTGGATGGCCATGAAGAGAGTGTTCAAGTCATTTCTGAGGTTGAGCTTTGTAAATATGAGCCTTGGGATTTACCAGCGAAATCATTCATTCAATCAGATAACGAGTGGTTCTTCTTCTCTCCCCGTGGAAGAAAGTATCCAAATGGTTCACAAAGTAAAAGAGCAACAGAATGTGGCTATTGGAAGGCCACTGGCAAAGAACGCAATGTAAAATCAGGTTCTAACATTATAGGTACAAAACGAACTTTGGTATTCCACTTAGGACGTGCACCTAAAGGGGAAAGGACTGAATGGATTATGCATGAGTATTGCATCAATGACAAGTCTCAGGATTCTTTGGTGGTTTGTCGCCTTAAGAGGAACACAGAGTTCCGTTTACACGATGCTTCAAATAGAGCTTCTTCAAGTCAAATGCACCCTGTGAATTCACATGAAAGTGATTGTGCTATCTCAGGAGGTGGTGGCATAGATCAAAGAGGTGGCTGTGAGCAAGACAAAGAGATTGGATGTTGCTCCAAAAGGAGCAGTAGCAGTTATGGTTCTCCTTCAATGGAGCAAATTGACTCTGTCTCTGAATCGAATCAGCGACCAGCTAATGATGCTGCTCAAACAGAATCTTCTGATCACTTAAAGGAGGTGGATGAAGAGGATTGTTATGCTGAGATACTAAAGGATGATATCATCAAATTAGATGAATCATCAATCCAACAAGAGGCTCACACAAGACAACAGGAACCTACACAGGTGCATCCCTGCCAAGATCCCAAGAATGTTCACCAATCTCCGTCACAGCACAAAGATTTTCGTTACACAGGGAAGATGTTTGGATCGCCATCAACGCCACCCTTCTCCTCAAGCCTTATATTATCCTCATCCCTCACGGTGTTGCACCTTCCTTTTCCACCTAAAGTATCTGTCCACCCTCATGTTTGA 1050 0.4352 MMEGVSREAQMSIAASSMFPGFRFCPTDEELISYYLRKKLDGHEESVQVISEVELCKYEPWDLPAKSFIQSDNEWFFFSPRGRKYPNGSQSKRATECGYWKATGKERNVKSGSNIIGTKRTLVFHLGRAPKGERTEWIMHEYCINDKSQDSLVVCRLKRNTEFRLHDASNRASSSQMHPVNSHESDCAISGGGGIDQRGGCEQDKEIGCCSKRSSSSYGSPSMEQIDSVSESNQRPANDAAQTESSDHLKEVDEEDCYAEILKDDIIKLDESSIQQEAHTRQQEPTQVHPCQDPKNVHQSPSQHKDFRYTGKMFGSPSTPPFSSSLILSSSLTVLHLPFPPKVSVHPHV 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi392g00045 349 MobiDBLite consensus disorder prediction 275 303 - -
Sebi392g00045 349 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 17 276 - -
Sebi392g00045 349 MobiDBLite consensus disorder prediction 278 303 - -
Sebi392g00045 349 MobiDBLite consensus disorder prediction 168 183 - -
Sebi392g00045 349 ProSiteProfiles NAC domain profile. 18 160 IPR003441 GO:0003677|GO:0006355
Sebi392g00045 349 MobiDBLite consensus disorder prediction 211 253 - -
Sebi392g00045 349 MobiDBLite consensus disorder prediction 211 243 - -
Sebi392g00045 349 Pfam No apical meristem (NAM) protein 20 143 IPR003441 GO:0003677|GO:0006355
Sebi392g00045 349 SUPERFAMILY NAC domain 10 159 IPR036093 GO:0003677|GO:0006355
Sebi392g00045 349 Gene3D NAC domain 27 178 IPR036093 GO:0003677|GO:0006355
Sebi392g00045 349 MobiDBLite consensus disorder prediction 168 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi392g00045 Sebi-Chr392 568372 573199 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi392g00045 5 286 NAC Transcription Factor Family AT2G27300 53.546 3.34e-100 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi392g00045 NAM 7.2e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi392g00045 - - cam:101495489 498.819