Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi392g00034 ATGGCCACAGAGCGAGAAATCTCACGTGCTTCGCGCATGCACGACTACACCACCACGGACGACGAAGACGACGTCGTTGAGGACAGCGAACTGGAGCACGACGAAGAACAAAAAGAAAAACAACAACGCGGGGGAGAATTAGAGAACGATGCTTCCTGCACAAGGAGGTCCTATGCGGGTCGGGTTGTGGATCCGAGAGAGAAATGGGTTCAGGAATGGAACAGAGTGTTCCTGTTAGTGTGCGCTGCGGGATTATTCGTGGATCCTCTCTTCTTCTACGCGCTCTCCATCAGCGACTCTTGCATGTGCCTCTTCGTTGACGGTTGGTTCGCCGTTACCGTAACGGTGCTCCGTTGCATGACGGACGCCTTGCACCTCTGGAACATTTTGTTGCGCTTCAAAATGGCTAAACGCTCATTCGGTTTCGGCGGTGGTACTGGCGCCGCCGCAGATGCCGGTAGCTCCGTCGCTCTTCGCTATCTCAAGTCACGGAGAGGATTCTTCTTTGATTTCTTTGTCATTCTTCCTATTCCTCAGATTGTGCTTTGGGTGGCAGTCCCATCCCTGTTGGAGAAAGGTTCAGTTACGGTGGTTATGACAGTAATGTTAACTATGTTTCTGTTCCAATACCTTCCCAAAATTTACCATTCAGTTTGCCATTTGAGACGCACACAAAACCTCTCTGGCTACATTTTTGGGACTGTTTGGTGGGGTATCGCCCTTAACATGATCGCCTATTTTGTCGCTTCCCATGCAGCAGGGGCATGTTGGTACTTGCTGGGGATCCAAAGGGCAGGGAAGTGTCTGAAAGAGGAGTGTGTAAAAACAAGTGGTTGTGGCATTAAAATGCTGTCTTGCCATAAGCCTATGTATTATGGAAGCAGTAGCTTAATGGATAGGGAGAGAGGAAGATTGGTGTGGGCAGAGAACAGGGAAGCAAGGTCTACATGCTTAAATGGTCCCGATAGTTACAACTATGGAGCTTATAAATGGACTGTTCAACTTGTCACTAATGAAAATCGATTGGAAAAGATACTTTTTCCTATCTTCTGGGGCCTAATGACTCTCAGCACATTCGGGAACCTAGAGAGCACGACGGAATGGCTAGAAGTAGTTTTCAACATCTTTGTGTTGACCAGTGGCCTTCTTCTTGTCACTATGTTGATTGGAAACATCAAGGTGTTTTTGCATGCAACAACATCAAAGAAACAAGCGATGCAATTGAAGATGAGAAACATTGACTGGTGGATGAGGAAAAGGAGATTGCCACAAGGGTTTAGGCAGCGCGTGCGTAACTATGAAAGACAACGGTGGGCTGCTATGCGTGGTGTTGATGAATGTGAGATGACAAGAAATCTCCCTGAGGGTCTAAGAAGAGATATCAAATACCATCTTTGTTTAGATTTGGTCAGACAGGTTCCACTGTTTCAACATATGGATGATCTGGTTCTAGAGAACATCTGTGACCGTGTGAAGTCTCTGATATTCACAAAGGGAGAAACAATAGCGAGAGAAGGAGACCCAGTTCAAAGGATGCTATTTGTAGTGAGGGGTCACCTTCAGAGCAGCCAGGTGCTGAGGGATGGGGTGAAAAGTTGCTGCATGTTAGGACCTGGAAACTTCAGTGGGGATGAGCTTCTTTCATGGTGTTTGAGGAGGCCCTTCATAGAACGGCTTCCACTATCTTCATCCACACTCATCACATTGGAAACTACAGAGGCATTTGGTCTTGAAGCAGAGGATGTGAAGTATGTGACACAACATTTCAGGTACACGTTTGTGAAGGAAAAGGTGAAGAGAAGTGCCAGGTATTACTCACCAGGCTGGAGAACTTGGGCTGCTGTTGCCATTCAATTGGCTTGGAGAAGGTACAGGCATCGCTTGACTTTGACCTCATTGTCCTTTATAAGGCCTAGGAGACCCGTGTCACGATGTTCTTCCTTGGGAGAGGACAGGCTTCGCCTCTACACCGCTTTGTTAACTTCACCAAAGCCTAATCAGGATGATTTTGACTTTTGA 2019 0.4715 MATEREISRASRMHDYTTTDDEDDVVEDSELEHDEEQKEKQQRGGELENDASCTRRSYAGRVVDPREKWVQEWNRVFLLVCAAGLFVDPLFFYALSISDSCMCLFVDGWFAVTVTVLRCMTDALHLWNILLRFKMAKRSFGFGGGTGAAADAGSSVALRYLKSRRGFFFDFFVILPIPQIVLWVAVPSLLEKGSVTVVMTVMLTMFLFQYLPKIYHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGIQRAGKCLKEECVKTSGCGIKMLSCHKPMYYGSSSLMDRERGRLVWAENREARSTCLNGPDSYNYGAYKWTVQLVTNENRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIFVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIDWWMRKRRLPQGFRQRVRNYERQRWAAMRGVDECEMTRNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGETIAREGDPVQRMLFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPLSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYRHRLTLTSLSFIRPRRPVSRCSSLGEDRLRLYTALLTSPKPNQDDFDF 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi392g00034 672 CDD CAP_ED 475 581 IPR000595 -
Sebi392g00034 672 Pfam Ion transport protein 73 392 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Sebi392g00034 672 SUPERFAMILY cAMP-binding domain-like 401 589 IPR018490 -
Sebi392g00034 672 MobiDBLite consensus disorder prediction 1 19 - -
Sebi392g00034 672 Gene3D Jelly Rolls 473 591 IPR014710 -
Sebi392g00034 672 FunFam Cyclic nucleotide-gated ion channel 1 402 466 - -
Sebi392g00034 672 SUPERFAMILY Voltage-gated potassium channels 65 396 - -
Sebi392g00034 672 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 39 637 - -
Sebi392g00034 672 Gene3D Helix hairpin bin 400 466 - -
Sebi392g00034 672 MobiDBLite consensus disorder prediction 1 50 - -
Sebi392g00034 672 FunFam cyclic nucleotide-gated ion channel 4 473 591 - -
Sebi392g00034 672 MobiDBLite consensus disorder prediction 33 50 - -
Sebi392g00034 672 ProSiteProfiles cAMP/cGMP binding motif profile. 475 554 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi392g00034 Sebi-Chr392 437787 444031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi392g00034 44 671 Ion Channels AT5G54250 77.445 0.0 1021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi392g00034 K05391 - gmx:100796761 1118.99