Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi392g00011 ATGGTGATGATGCTAGAATTTGCCAAGTGGACACCATTTGTTCTAGCTTTTCTTCTATATGCGGGTAAGGAATCATTTGCCTCATCATTCACTCCCATTGATAATTACTTAGTAGCTTGTGGTTCATCCAACAGCATCAACTTTAAGGGTCGAACTTTCATTCCTGACTCTGAACATCCCAACCTTCAAATAACAGCCAACACATCTATGACCATTACCTCTAAACTCACTGTCCCTTCTCCACTCTATCAATCAGCTAGACTCTTCTCAGGAAATGCATCATATCTATTCAAAATTCAACAACATGGGAGGCATTGGATCCGCCTCTATTTTCACCCTTTTCCTGATTCCAACCACAACATGAACTTTGCCTCAATAACAGTAGTCACTGATAGTTTTGTGCTTCTCAATAATTTCACTTTCAAGAACTATAGTGACTCTCACTTGTTCAAAGAGTATGCAATCAACATTACATCAGATGAGTTACCTCTCACATTCATCCCACACAGCAATTCACTTATCTTTGTTAATGCCATTGAAGTTGTCTCCATACCTGATGAGCTCTTCCCTGACCAAATAGTAGTGGCTGTAAATCCATCTAGCTTTTTTGAACAACTTCCAAAATCTGCCCTTGAAACAGTTTACCGGGTGAATGTAGGGGGTGCATTTCTAAGCAATGAGAATGACACCCTTGGAAGGATTTGGGAGAATGATGAAAACTACTTCCACTCAACCACTACTGCTCTTAACATTTCAACAAACCCTGCTGCAATAATGTTTCCCCCTGCTGTTACACCTTATACAGCACCACCATTAGTTTATGCCACAGCCAGAGCCATGGGGAATGCATCAGAAGGGTCTTATTTAAGTTGGGTCTTCACTGTAGATCCAAACTTTCAGTATTTTGTTAGGGTGCATTTCTGTGACATAATTATCAAGTCAGTGTACACTGTAGGTTTCAATCTGTTTATAAATGGAGCATTTGCTGAGAAAAGTCTTGTCCTTTCATATTCTGTGCCATATTACACAGACTTCATCTCTCACTCCTCAGCAAACACTTTGAAAGTAAGTGTTAGTTTGGGTACAAAAGCAGACATGCTAAATGCAATAATGAATGGGTTGGAGATAATGAAAATCATCAAACATTTGGATGGATTTTCCTCTATTCAGAGTTTTCATTCTAGCATACCAGGAAAAAAGAAGAAGAGTGTTAGTGTTGATCATGATCCTAATTCTTTGCAAAGAACTGAAAGAAGTGGGAAGTTGGGGGTTATAATTGGTTTTAGTGTCACTGTTTTAACGTTTCTGGTATTACTTGGGCTATCATTTTGTTACTTGAAAGCTCGCAGGTTGAAGAAGAAATCAGCAATCACTTTTGAATTTCTGAGACAATTTACTTTCCATGAAATCCAACAAGCAACCAATGATTTTGATCCTAACCTGCTTATTGGAGAAGGAGGATTTGGTAAGGTCTATAAAGGAACACTAGAAAATGGGAAAACAGTGGCTATCAAAGTAGCAAATCCTGAATCTAGACAAGGTCTCAATGAATTCCATAACGAGATAGAGTTGTTATCTGGACTTCGTCATCAGAACCTTGTCTCTCTTGGTAGCTTCGGGTATGTTGATCCTGAGTATTTTAGAACCAAGTATCTCACTAAGAAATCAGATGTTTACTCGTTTGGGGTGGTGTTGATTGAAGTTATCTGTGGCAAGCCTGCTTTAGATGATGCTCGTCCAACTCAGCAAATGAATTTAGCATTGTGGGCATTAAGCTGCCATGGAAAGGGGACTTTCTATGAAATGATGGATCCATATTTGATAGGCAAAGTGAATATGGATTCTATGAAAAAGGTCTCTGAGTTGGCTTGGAAGTGCTTGGAGGAGCGTCGGGTGAACAGGCCACCAATGGGGTATGTATTGTGTGAGCTTGAAGAGGCTCTCCATCTTGAGTTGGCATCACAAGTTTTGAATCACTCTGTCACTCATGCCAATGTAGAAAATCGTTTCACAGATGATATAGAAAATGTTGCTTGA 2037 0.3942 MVMMLEFAKWTPFVLAFLLYAGKESFASSFTPIDNYLVACGSSNSINFKGRTFIPDSEHPNLQITANTSMTITSKLTVPSPLYQSARLFSGNASYLFKIQQHGRHWIRLYFHPFPDSNHNMNFASITVVTDSFVLLNNFTFKNYSDSHLFKEYAINITSDELPLTFIPHSNSLIFVNAIEVVSIPDELFPDQIVVAVNPSSFFEQLPKSALETVYRVNVGGAFLSNENDTLGRIWENDENYFHSTTTALNISTNPAAIMFPPAVTPYTAPPLVYATARAMGNASEGSYLSWVFTVDPNFQYFVRVHFCDIIIKSVYTVGFNLFINGAFAEKSLVLSYSVPYYTDFISHSSANTLKVSVSLGTKADMLNAIMNGLEIMKIIKHLDGFSSIQSFHSSIPGKKKKSVSVDHDPNSLQRTERSGKLGVIIGFSVTVLTFLVLLGLSFCYLKARRLKKKSAITFEFLRQFTFHEIQQATNDFDPNLLIGEGGFGKVYKGTLENGKTVAIKVANPESRQGLNEFHNEIELLSGLRHQNLVSLGSFGYVDPEYFRTKYLTKKSDVYSFGVVLIEVICGKPALDDARPTQQMNLALWALSCHGKGTFYEMMDPYLIGKVNMDSMKKVSELAWKCLEERRVNRPPMGYVLCELEEALHLELASQVLNHSVTHANVENRFTDDIENVA 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi392g00011 678 FunFam Putative receptor-like protein kinase 35 185 - -
Sebi392g00011 678 Pfam Malectin-like domain 39 379 IPR024788 -
Sebi392g00011 678 PANTHER OS03G0124300 PROTEIN-RELATED 11 452 IPR046957 GO:0004672
Sebi392g00011 678 FunFam Receptor-like protein kinase FERONIA 210 381 - -
Sebi392g00011 678 Gene3D Transferase(Phosphotransferase) domain 1 536 673 - -
Sebi392g00011 678 Gene3D Transferase(Phosphotransferase) domain 1 458 535 - -
Sebi392g00011 678 FunFam receptor-like protein kinase FERONIA 445 546 - -
Sebi392g00011 678 ProSiteProfiles Protein kinase domain profile. 477 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi392g00011 678 Gene3D - 209 380 - -
Sebi392g00011 678 Gene3D - 35 184 - -
Sebi392g00011 678 ProSitePatterns Protein kinases ATP-binding region signature. 483 505 IPR017441 GO:0005524
Sebi392g00011 678 Pfam Protein kinase domain 482 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi392g00011 678 Pfam Protein tyrosine and serine/threonine kinase 541 638 IPR001245 GO:0004672|GO:0006468
Sebi392g00011 678 SUPERFAMILY Protein kinase-like (PK-like) 463 653 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi392g00011 Sebi-Chr392 136003 138348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi392g00011 530 653 Receptor kinase-like Gene Family AT5G59700 49.194 1.55e-31 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Sebi392g00011 Malectin_like 2.8e-37 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi392g00011 - - tpra:123883851 621.698