Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi392g00006 ATGGCGACTAAGGCAACTATTGCAAGTGATTTGGGAAGGGACTGTTCTGAGGAGGACAAGCTAGCATTTAAAGAAGGGTTCAATAGAGTCATTTCACTCTCTGATAGCATGATTCAGTTCATGAAGGTTTTGGAGCATCGAGTGAACAAAATGGATGAACGCATTACTGAGTTGGTTGCAAGAGTTGACAAGTTTAATTTGAATCTTGATACACTTGTCACTGTCACTAATAATATCAACTCTGAAATAGCAAAGTCCACTAAAACTGAATGCTCAACAAAAATGGATCAAAATATTGGGTCCACGCATCCACCTGAGCCTGAACCCATAGTGAGCCCACCCATTAAAAAGGACTGGCCTTTCGATAAGCAAGTCAAGGATGGGCCCATAAAATCTTTAACAGAACTTTCTCCAAAATTCGTTAGGAACATCATTTTTGATGTATCCGACGAGGAAGAGGGAGACGAGATGGAATTTGATCCCACAAACGTTGAGGTTCGTGAAGTCACAGGAACGAAGAAAAAAAGCTCTCCTATTGAAGGCCAGTGTAGCAAAGATGAGAATACATCCCATAACAGAGGCAGAATAACACGTTCCAATTATGTTCGTCGTTGTAGGGGTTCCACAAGTGACGACTCAAAGCTCTCTGGGAAGAAGTTATTCCAAACCCCTTCTTCAAAGTCCCCAGGTAAAGGCTCAAAAAGGTTCAGAGCACAAGACGGGAGCACTAACCCGGAAAATGATGCTGCACAGAACCATACACCAGACAGAAAGAAGGATGGTTTGGATGAAAGTACCATAAAGACTCCATCATCCAATATCTTACCAAAGACAATGTTTTCAAGGTTTAGGCCTTCAAATGACATGAAACTCACTGAGAGGGAAGTTAAGATTGTTGCATACATCTTTTCCTACGATGGAGACGAGGATGACATATTAGTGAAGATTTCTGACTTTGTAGCAACAAGGAAAGATTTTGTATCCCTTTGTCCAGATCGACTCGTCAACAACAAGATAATGACACTGGCCACACTCAAGGGATCTTGGGCACAATCTCGGAAATCAAACAAGTCAGTTTGGTATTTACCACCAAATTTCACGGATGATGTTCTTGAGGGTTGCACAACCGATGAGTTGATTTCAAAATATGCTAGAATGTGGATGCAGCCCTACCCTCAGCTTAAATATTGTGAGGCATTGACAAATATGATGACATCTGAGGCATATCCAGAAGACTTTCTTAATTCTGGTGACAAAATTGACATGTGGGAGTTATTTGTTGCCAGAAATGTTATAAATGGATCGACTGTAGAAAACTCTGCCATATGGTTATTGGACTGGATGGAGATGGAAAGTGCATTTCACACAAATGTAATAGCCTTGATTAATGAACGTCACATTCGCATGCGTTGTGCTTTGAATCTGGTCTGTGGAGAACACAATGAATACAACCAGGGTTTAGCCAAGAAACTTCCAAACACCGTATTGTCATGGAGTTTTCACGAAGCCAGAACAGTTCCATTAACGCTTCAACAAGATCCATCCCCTAGGGATGATGATGATTTGATTGGGGTTCCTTTCATGGCATCTTGGCTACCATATCGGTCCTCAATCATAATTGCAAAAAAATTGATTTCAAGTTTTCGAGCAGAGTTACCAAAAGAGGTGACTCTAAGAGATCCGGTTGGAAATGAATTTCCTGTTTCCATTGAGGAGTTAACCAACAGACACTGCTTCACAAAGGGTTTGCCACAGATGAGGGCTTTTTACCATGTTCATTATCCACTGCACATGTGGTACAGATACGTTGGAAATGCTACATTCAGCTTTGAACTATGGCCTATAGATGGAGAAGGCCAGATTGATTATCCTAATCCCGCTTTAAAAAAGGAAGATCATGAACAATGTGTCAACCAACCTGTGACAACATCAGCCAGTCATGACGAAGATGTAAGTAGTGAAGCAGATGAAATCATGGGAGTTCCCGGTGCAGACCTATGGACGACTACACTTACTCAGGCACAGGTGGAAGGCAGGAGGGCAGTGGTTATACCAGGGAGGGCTGTGACCACTTACTTCCACAACAGGCCAAAGAAGATCCGAGTTAGATTACCAGATGACCATATCAAATCGTGGGAATTGATTTGGAATCGACGAATCCCGACAGAGTGCAAAATTGGACATGGTTGGAGTGAATTTTGTACCACACATGGGCTGCAAAAGGGAGACCACATTAGGTTTTGGAAATTGGAAAATGAAGCGTTCATCAGAATCGTTCGAACAAAATCCTCAACTTAG 2298 0.4195 MATKATIASDLGRDCSEEDKLAFKEGFNRVISLSDSMIQFMKVLEHRVNKMDERITELVARVDKFNLNLDTLVTVTNNINSEIAKSTKTECSTKMDQNIGSTHPPEPEPIVSPPIKKDWPFDKQVKDGPIKSLTELSPKFVRNIIFDVSDEEEGDEMEFDPTNVEVREVTGTKKKSSPIEGQCSKDENTSHNRGRITRSNYVRRCRGSTSDDSKLSGKKLFQTPSSKSPGKGSKRFRAQDGSTNPENDAAQNHTPDRKKDGLDESTIKTPSSNILPKTMFSRFRPSNDMKLTEREVKIVAYIFSYDGDEDDILVKISDFVATRKDFVSLCPDRLVNNKIMTLATLKGSWAQSRKSNKSVWYLPPNFTDDVLEGCTTDELISKYARMWMQPYPQLKYCEALTNMMTSEAYPEDFLNSGDKIDMWELFVARNVINGSTVENSAIWLLDWMEMESAFHTNVIALINERHIRMRCALNLVCGEHNEYNQGLAKKLPNTVLSWSFHEARTVPLTLQQDPSPRDDDDLIGVPFMASWLPYRSSIIIAKKLISSFRAELPKEVTLRDPVGNEFPVSIEELTNRHCFTKGLPQMRAFYHVHYPLHMWYRYVGNATFSFELWPIDGEGQIDYPNPALKKEDHEQCVNQPVTTSASHDEDVSSEADEIMGVPGADLWTTTLTQAQVEGRRAVVIPGRAVTTYFHNRPKKIRVRLPDDHIKSWELIWNRRIPTECKIGHGWSEFCTTHGLQKGDHIRFWKLENEAFIRIVRTKSST 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi392g00006 765 SMART B3_2 667 762 IPR003340 GO:0003677
Sebi392g00006 765 CDD B3_DNA 668 753 IPR003340 GO:0003677
Sebi392g00006 765 Pfam B3 DNA binding domain 668 758 IPR003340 GO:0003677
Sebi392g00006 765 Gene3D - 646 763 IPR015300 -
Sebi392g00006 765 MobiDBLite consensus disorder prediction 168 280 - -
Sebi392g00006 765 Coils Coil 41 61 - -
Sebi392g00006 765 MobiDBLite consensus disorder prediction 266 280 - -
Sebi392g00006 765 MobiDBLite consensus disorder prediction 214 250 - -
Sebi392g00006 765 SUPERFAMILY DNA-binding pseudobarrel domain 667 762 IPR015300 -
Sebi392g00006 765 MobiDBLite consensus disorder prediction 88 123 - -
Sebi392g00006 765 ProSiteProfiles B3 DNA-binding domain profile. 667 762 IPR003340 GO:0003677
Sebi392g00006 765 MobiDBLite consensus disorder prediction 251 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi392g00006 Sebi-Chr392 95421 99793 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi392g00006 B3 2.8e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi392g00006 - K10779 lja:Lj1g3v3704680.1 153.295