Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi391g00040 ATGGCTGTTCCTGTTTCTAGTGTTAGAGGATCATTACCCGATCAGGAGCAAGAATACTCTATCATAGTCTCAACCCTTATCAATGTTATCTCTTCTGATGCTTCTGCAGTGACCACTACTGCTATGCACAGTGATTACACTCGTGTTCCTGTTCCTGTTGTTGATGGTAATTACCACTACAACTTGCATCATGGGGAATCAGCAGCAACCACATCATGGTCCTCTTGTACCAGTGGGACCCTCCTGTCCTACCAGAACCAACCTGATTCTGACACGTGTCGTGTCTGCCAAATCAGCGGCTGCCTCGGTTGCAACTTCTTCTTCCCGCCAGCGGAGCAAAAGGGAACAGAGGGAGAGAACAGGAAGAAGAGGAGGAAGTACAGGGGAGTGAGGCAGAGGGCATGGGGGAAGTGGGTGGCAGAGATTCGAGACCCACATAGAGCCACTCGGGTTTGGCTGGGTACTTTTGAGACTGCAGAGAAAGCTGCAAGGGCTTATGACAGAGCTGCTATTGAGTTTCATGGGGCTCGAGCTAAGATCAATTTTGGGTTCTCTGACTATGCAGTTGATGACAAGCAAAGTGCAGTGGTAGGGATGAACCAAACAAAACCCAACATCGTCTCATCTTCATCTCAAAACCACTCATTCGGAGAACTAGACTAA 663 0.4857 MAVPVSSVRGSLPDQEQEYSIIVSTLINVISSDASAVTTTAMHSDYTRVPVPVVDGNYHYNLHHGESAATTSWSSCTSGTLLSYQNQPDSDTCRVCQISGCLGCNFFFPPAEQKGTEGENRKKRRKYRGVRQRAWGKWVAEIRDPHRATRVWLGTFETAEKAARAYDRAAIEFHGARAKINFGFSDYAVDDKQSAVVGMNQTKPNIVSSSSQNHSFGELD 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi391g00040 220 PRINTS Ethylene responsive element binding protein signature 149 165 IPR001471 GO:0003700|GO:0006355
Sebi391g00040 220 PRINTS Ethylene responsive element binding protein signature 127 138 IPR001471 GO:0003700|GO:0006355
Sebi391g00040 220 SMART rav1_2 126 189 IPR001471 GO:0003700|GO:0006355
Sebi391g00040 220 ProSiteProfiles AP2/ERF domain profile. 126 183 IPR001471 GO:0003700|GO:0006355
Sebi391g00040 220 FunFam Ethylene-responsive transcription factor 2 125 184 - -
Sebi391g00040 220 CDD AP2 126 182 IPR001471 GO:0003700|GO:0006355
Sebi391g00040 220 Gene3D AP2/ERF domain 125 184 IPR036955 GO:0003700|GO:0006355
Sebi391g00040 220 PANTHER DNA-BINDING DOMAIN 78 195 IPR044808 GO:0003700|GO:0009873
Sebi391g00040 220 SUPERFAMILY DNA-binding domain 126 184 IPR016177 GO:0003677
Sebi391g00040 220 Pfam AP2 domain 126 175 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi391g00040 Sebi-Chr391 848581 849243 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi391g00040 16 187 AP2-EREBP Transcription Factor Family AT4G34410 43.069 4.52e-34 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi391g00040 AP2 4.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi391g00040 - - lja:Lj0g3v0306799.1 203.371