Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi391g00034 ATGCTTCCACAGGCAACATCTGATGAGGCACAGTCACAAAAGTTTGCAAGCTCCATTAAGGTTGCAACAGATGGAACATCCTCTCGTGGTGAGGCTATGTCATCTGCTGTGATTCGAGCAGAGGGGATCCAGTCATGTTTGGGACAAGAATTCCCCAGTTTTGTGAAGTCATTGGTCAGATCACATGTTGCTAGTTGTTTTTGGATGGGGTTGCCTGTGGCATTCTGTAAAAGACATTTACCCGATAAGGATGTAACTATCACTTTGGAAGATGAATCTGGAAGAGAATACAAAACAAAATACATTGCATGTAAGACAGGATTGAGTGCTGGTTGGAGACAATTTTCTGCTGTGCATAAATTGCAGGAGGGTGATGTAGTTGTCTTCCAATTAGTTGAACCTACCAAATTTAAGGTTTATATAATAAGAGCTAATAAGTTAAAGGAACTTGATGGGGCCCTTTTGAATCTTGACAGTTATACGAAACAAAAAGTTGGAGGCAAGACTTGTTTCTCTATGCTTTTGATCAAGGGAAGAAATAACATAGATACTAATGTTATAGCATGTAATAGCCCAAAGAGAAAACATGGTAAATCTGTCCCACCAGATGTCCAAAAGAAAAAGAAGACCAATGTGTCGAGAATGGGGCCTAAGATGAAGCAGTCTATAGAAGAATCTGAAATTGATAGTGAGGAAGCTCTCTCAGATGTATTGGAGGGCTTTAGAATGCTTGAATTCAAAGATTTAAAAGGTTTTGAAAATTTCAACATCATAGTTGATGGAATGCTAATAGATGCTGAACTTTCTCCTGAAATTCGAAACAAGTACTACAAACTCTGCTATAGTCAGCAAGCCTTCCTTCATGAACATCTCATCAAAGGCATGAACTATAAGTTGATTGTTGGAATTATATATGAAATTGTCAACATTGCAGATGCCATAAAAGTAAGTGTGATATCTACCCCACGTGTTGAATTTGCTAATTGGGATAAGACTTTGCTTGCCTTTGAGCATTTGGGAATGAATGTAGAATTTTTAAGAGTCCGATTGCGCCGCCTTGTAAGCCTTGCCTATGAATCAGATGATGCCTCAGGGACCAAAAGATACTTGATGTATAGAACTGAACACAGTCAAGCAGATGATGAAATAAAGAACATGGAAAACAAGCTTGAAGAATTGAAGCAAGCTTGTAATGGTTTTGGTGCTTATCTTGAGAGTCTGAAGTGCAAAGCTGAAAGTTATCAGCTCAAGTATCAGAAAGAGCTTGCTGCTCCTTGGTGA 1281 0.388 MLPQATSDEAQSQKFASSIKVATDGTSSRGEAMSSAVIRAEGIQSCLGQEFPSFVKSLVRSHVASCFWMGLPVAFCKRHLPDKDVTITLEDESGREYKTKYIACKTGLSAGWRQFSAVHKLQEGDVVVFQLVEPTKFKVYIIRANKLKELDGALLNLDSYTKQKVGGKTCFSMLLIKGRNNIDTNVIACNSPKRKHGKSVPPDVQKKKKTNVSRMGPKMKQSIEESEIDSEEALSDVLEGFRMLEFKDLKGFENFNIIVDGMLIDAELSPEIRNKYYKLCYSQQAFLHEHLIKGMNYKLIVGIIYEIVNIADAIKVSVISTPRVEFANWDKTLLAFEHLGMNVEFLRVRLRRLVSLAYESDDASGTKRYLMYRTEHSQADDEIKNMENKLEELKQACNGFGAYLESLKCKAESYQLKYQKELAAPW 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi391g00034 426 MobiDBLite consensus disorder prediction 196 210 - -
Sebi391g00034 426 Coils Coil 369 396 - -
Sebi391g00034 426 CDD B3_DNA 52 143 IPR003340 GO:0003677
Sebi391g00034 426 SMART B3_2 54 145 IPR003340 GO:0003677
Sebi391g00034 426 ProSiteProfiles B3 DNA-binding domain profile. 54 145 IPR003340 GO:0003677
Sebi391g00034 426 Gene3D - 31 147 IPR015300 -
Sebi391g00034 426 MobiDBLite consensus disorder prediction 192 221 - -
Sebi391g00034 426 Pfam B3 DNA binding domain 54 144 IPR003340 GO:0003677
Sebi391g00034 426 SUPERFAMILY DNA-binding pseudobarrel domain 48 145 IPR015300 -
Sebi391g00034 426 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 28 148 IPR044837 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi391g00034 36 158 B3 DNA Binding Superfamily AT3G19184 50.400 1.67e-36 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi391g00034 B3 7.3e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi391g00034 - - gmx:100819237 614.764