Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi390g00056 ATGGGTGTCTCAGGGAAGTGGATTAGGTCATTGGTTGGTCTAAAGAAATCAGAGAAGCCTGAGTCTTCTTCAGAGAAGGATGGAAATAAGGTTGGCAAGTTTCGGCATCGGAGAAAGCATTCCATTGAAATTAACAATAGCAAACTTCAAAATGAGTTTGATGATGATGGTACCCCGCCTAATAGAGATTCAGACAATGCAAATCCTCATTCAAACCTTGATATCCATTATTCACCTACTTCACAACAAGCACAGGATGCTGCATATAATCATCAAATCATGAGGGAAGAACGGGCTGCAACAGTCATTCAAACAGCATTTCGAGGATTCCTGGCCAGAAGAGCACTACGAGCTTTGAAAGGATTGGTAAGGCTCCAGGCCCTTGTAAGGGGCCATGCCGTAAGAAAACAAGCTGCTATAACTCTCCGATGTATGCAAGCATTGGTGAGGGTTCAAGCTCGTGTTCGGGCAAGGCGTGTTCGCTTGGCATTGGAAAGTCAAACAGCACAACAGAAACTCCAGCAACAGCTTGCAAACGAAGCTCGTGTTCGAGAAATTGAAGAAGGTTGGTGTGACAGTGTGGGATCTGTTGAAGAAATTCAAGCCAAAATAATAAAGAGACAGGAGGCTGCAGCCAAACGTGAGAGAGCCATGGCATATGCTCTAGCTCATCAGTGGCAGGCAGGAACAAGGCAGCAGGCTGTGTCCTCCGGTTTTGAACCTGATAAAAGTAGTTGGGGTTGGAATTGGTTGGAAAGGTGGATGGCTGTACGTCCATGGGAGAATCGCTTTCTTGACATTAATATGAGGGATGGAGTAATGGCAGACGGAAATGGAGCTATTGATGGTAAAAAAGGAATCAGACCTCAGTTAAGATCTGCTAACACAAAATCAATTCCACCAAGTATTCATCCAAACCTTGACAGTCAGAAAACTGGTCCCTCTCTTTCTGATGGCTGTGATTCTTCTTCACCTAGCAAGTCAGCAGGTTTGCTAGAGACATCAAACATACAGTCTGTTAAACCAAAGTCTAATGCAAATGTTCAAGATCCCATTGAAGAAACCAACTCAAAATCTGAAACTCGAAGATCTCACAGTAATCCAAAGGAGAGAATCACACAGGTAGATAAACAGGCAAAAAAGCGACTATCTCTGCCTAACAGTGGGGGAGGTCCTGGGGTTCAAACAACCAGACATCCTACAAGAAGTTATGTGAAAGGGACACATGGCCCTCAAAAGCCTATAAGGGATAAACCTAAGCTCAATGGAGGAGGGGATGTGAATCTCACTAAATCTGTTGCACAGCGCACGGTCATGTAG 1320 0.4447 MGVSGKWIRSLVGLKKSEKPESSSEKDGNKVGKFRHRRKHSIEINNSKLQNEFDDDGTPPNRDSDNANPHSNLDIHYSPTSQQAQDAAYNHQIMREERAATVIQTAFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRLALESQTAQQKLQQQLANEARVREIEEGWCDSVGSVEEIQAKIIKRQEAAAKRERAMAYALAHQWQAGTRQQAVSSGFEPDKSSWGWNWLERWMAVRPWENRFLDINMRDGVMADGNGAIDGKKGIRPQLRSANTKSIPPSIHPNLDSQKTGPSLSDGCDSSSPSKSAGLLETSNIQSVKPKSNANVQDPIEETNSKSETRRSHSNPKERITQVDKQAKKRLSLPNSGGGPGVQTTRHPTRSYVKGTHGPQKPIRDKPKLNGGGDVNLTKSVAQRTVM 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi390g00056 439 Gene3D - 95 138 - -
Sebi390g00056 439 MobiDBLite consensus disorder prediction 62 88 - -
Sebi390g00056 439 ProSiteProfiles IQ motif profile. 96 124 IPR000048 GO:0005515
Sebi390g00056 439 ProSiteProfiles IQ motif profile. 120 147 IPR000048 GO:0005515
Sebi390g00056 439 MobiDBLite consensus disorder prediction 355 378 - -
Sebi390g00056 439 MobiDBLite consensus disorder prediction 1 88 - -
Sebi390g00056 439 SMART iq_5 95 117 IPR000048 GO:0005515
Sebi390g00056 439 SMART iq_5 118 139 IPR000048 GO:0005515
Sebi390g00056 439 Pfam IQ calmodulin-binding motif 97 117 IPR000048 GO:0005515
Sebi390g00056 439 PANTHER IQ-DOMAIN 5-RELATED 1 390 - -
Sebi390g00056 439 MobiDBLite consensus disorder prediction 389 403 - -
Sebi390g00056 439 MobiDBLite consensus disorder prediction 12 31 - -
Sebi390g00056 439 MobiDBLite consensus disorder prediction 294 354 - -
Sebi390g00056 439 MobiDBLite consensus disorder prediction 294 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi390g00056 Sebi-Chr390 798413 804162 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi390g00056 1 398 IQD Protein Family AT3G22190 56.965 3.09e-118 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi390g00056 - - tpra:123923158 611.298