Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi390g00043 ATGAGCTTTCAGGATATCGAGGCCGGCCGGCCTTTCGCTTCCCGGCGCAACCTCATCAACGGCAAGCAGGACCCGACGCAGGCCGTTGCTTCCGGCATATTTCAGATCAACACCGCCGTCTCCACGTTTCAGAGGCTCGTTAACTCCCTCGGAACCCCTAAAGACACGCCTGAGCTCCGCGAAAAGCTGCACAAGACGAGACTGCACATTGGACAATTGGTGAAGGATACATCGGCTAAACTTAAACAAGCAAGTGAAATTGATCACCATGCTGATGTTAATGCAAACAAGAAGATAGCTGATGCCAAACTCGCGAAAGATTTTCAAGCAGTGTTGAAAGAATTTCAGAAAGCACAGCGTCTTGCAGCTGAGAGGGAGACAGCTTACACTCCTTTTGTTCCTCAAGCAGTTCCATCCAGCTATACAGCCAACGAAGTAGATGTCAGTTCTGATAAGAGTCCAGAACAGCGTGCCCTTCTTGTGGAATCCAGAAGACAGGATGTACTATTCTTAGATAATGAAATTTCCTTCAATGAGGCTATCATTGAGGAAAGAGAGCAGGGCATTCAAGAAATCCAGCAGCAAATTGGTGAAGTAAATGAGATTTTCAAAGATCTTGCTGTGCTTGTTCATGAGCAAGGAGCAATGATTGATGATATTGGGTCCAACATTGAGCATTCCCATGAAGCAACTATACAAGCAAAATCTCAACTTGCGAAAGCTTCAAAGACACAAAGATCAAATTCTTCTTTGGTACATATAAGTTTTCTTATTTGTGATTGGATTACTGGTTTTAAGTTTCTTCTTCCTCCCATCACATAA 822 0.4428 MSFQDIEAGRPFASRRNLINGKQDPTQAVASGIFQINTAVSTFQRLVNSLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKQASEIDHHADVNANKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAVPSSYTANEVDVSSDKSPEQRALLVESRRQDVLFLDNEISFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIEHSHEATIQAKSQLAKASKTQRSNSSLVHISFLICDWITGFKFLLPPIT 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi390g00043 273 SMART SynN_4 13 127 IPR006011 GO:0016020
Sebi390g00043 273 SUPERFAMILY t-snare proteins 22 234 IPR010989 GO:0016020|GO:0016192
Sebi390g00043 273 ProSitePatterns Syntaxin / epimorphin family signature. 185 224 IPR006012 GO:0005484|GO:0006886|GO:0016020
Sebi390g00043 273 Gene3D - 20 133 - -
Sebi390g00043 273 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 179 241 IPR000727 -
Sebi390g00043 273 SMART tSNARE_6 174 241 IPR000727 -
Sebi390g00043 273 FunFam Syntaxin-22 like 20 133 - -
Sebi390g00043 273 FunFam Syntaxin-22 like 172 264 - -
Sebi390g00043 273 Pfam Syntaxin-like protein 30 129 IPR006011 GO:0016020
Sebi390g00043 273 Gene3D - 173 269 - -
Sebi390g00043 273 CDD SynN 23 156 IPR006011 GO:0016020
Sebi390g00043 273 Pfam SNARE domain 216 259 IPR000727 -
Sebi390g00043 273 PANTHER SYNTAXIN 26 255 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi390g00043 Sebi-Chr390 649144 651464 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi390g00043 1 258 SNARE and Associated Proteins AT5G46860 74.903 1.45e-136 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi390g00043 - - gmx:100810149 424.861