Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi390g00040 ATGTCGAACGCGAACGCGCCTCCGCCGTTTCTGAGCAAGACGTATGACATGGTGGATGACCCTTCAACCGACGCGATAGTGTCTTGGAGCGCAACCAACAACAGCTTCGTAGTTTGGGACCCACCCGAATTCGCAAGGGACCTTTTGCCCAAGTACTTCAAGCACAACAACTTCTCCAGCTTCGTTAGGCAGTTAAATACATATGTATGTTCTGTTCCACCCTTCTTCTTCTTTTGCTTTGCATTTTCTTCATTGAATGATAATTCTCTTGAACTGGTTAATCTCTGCCTTAGAATAACGCCTATAGTTAGTGCCTTAGTGGGATATGGTTGGATGTTTTGCGCTCTTGTAGGTGTAAGTAGTATGGTTCGTGATGAGTCAACTCATGTTTATGCTGTGACTGTGGATTTGACTCTTTATGGAGCAGAAGAGGGAAAATTGACAAAGAAAGCAGTTCTCAGGATAATCAGTTACTTTATTGTTAGTATATTGATGTATTGTGTATCAAATGTTGAAGAGGGTTTCAGGAAGGTCGATCCTGATCGCTGGGAATTTGCAAATGAGGGCTTTTTGAGGGGTCAAAAGCACTTGCTTAGGAGTATAACTCGTAGAAAACCTGCCCATGGACATAATCAACAGGCTCAGCAACCACATGGACAGAGTTCATCAGTAGGGGCATGTGTAGAAGTTGGGAAGTTTGGGCTTGAGGAAGAGGTTGAGAGGCTTAAAAGAGATAAGAATGTGCTCATGCAAGAGCTTGTGAGGTTGAGACAGCAGCAACAGACCACTGATAACCAGCTGCAGGCAATGGTTCAACGGCTTCAGGGAATGGAACAACGACAACAGCAAATGATGTCATTCCTTGCAAAAGCTGTCCAGAGCCCTGGCTTCTTTGCTCAGTTTGTTCAACAGCAAAATGAGAGCAATAGTAGGCGTATAACTGAAGTTAACAAAAAGCGTCGGCTCAAGCAGGAAGGTATTGTTGAAACAGAGCGCACTACTGCTCCTGATGGACAAATTGTTAAATATCAACCTCTGATGAATGAAGCAGCAAAAACAATGCTAAGGAAGATAATGAAATGGGATGCTTCTCGTGTAGAATCTTTCAATAAAAACCCTGAAAATTACTTGATTGGTGATGGTTCATCATCCAGTGCAATGGACAGTAGCAGCACTTCAAGCTGGACTTCTGGAGTAACACTTCAAGAAGTCCCTCCAGCTTCAGTGCAGTCTTCTCACATTCCAGCTGCTGCAACGGTGACTCAAGGACATGTCCCCTCAGCAGAAAAACCTGAAATTCTATCTGTACCACAACCTGCAGCTTCTGAAAAAGTTATAAAGGATGGAGCACATGAGGCACCTTCTATCCCTGTTTCTCAAACAGATGTGATCATGCCTGATCTTCCTTCAATACCGGAGATAGTTCCAGGAAGTATTCTTTATATTCCTGAGGAAAATTATATGACTGCTGAGACAGATGAGGGATATATGGATCCTAATTCACTGGGAGTTGGTGGGTCATTTCCCATTGATTTTGAAGGTATTTCATCTGATGCAGACATCGATGATTTGTTAGCCAATCCTTCTATTTGGGATGATCTTTTGCGAACTCCAGTTCCAGAGGATATTGAGACCAATGTCGCCGAAGTATCTAAAGGGAATGAGGTACAGCCAACGGAAAATGGATGGGACAAAACTCAACATATGGATCAACTTACAGAGCAGATGGGTCTTCTTTCTTCTGATGCAGAAAGACTTGATTGTCTATGA 1770 0.4316 MSNANAPPPFLSKTYDMVDDPSTDAIVSWSATNNSFVVWDPPEFARDLLPKYFKHNNFSSFVRQLNTYVCSVPPFFFFCFAFSSLNDNSLELVNLCLRITPIVSALVGYGWMFCALVGVSSMVRDESTHVYAVTVDLTLYGAEEGKLTKKAVLRIISYFIVSILMYCVSNVEEGFRKVDPDRWEFANEGFLRGQKHLLRSITRRKPAHGHNQQAQQPHGQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDNQLQAMVQRLQGMEQRQQQMMSFLAKAVQSPGFFAQFVQQQNESNSRRITEVNKKRRLKQEGIVETERTTAPDGQIVKYQPLMNEAAKTMLRKIMKWDASRVESFNKNPENYLIGDGSSSSAMDSSSTSSWTSGVTLQEVPPASVQSSHIPAAATVTQGHVPSAEKPEILSVPQPAASEKVIKDGAHEAPSIPVSQTDVIMPDLPSIPEIVPGSILYIPEENYMTAETDEGYMDPNSLGVGGSFPIDFEGISSDADIDDLLANPSIWDDLLRTPVPEDIETNVAEVSKGNEVQPTENGWDKTQHMDQLTEQMGLLSSDAERLDCL 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi390g00040 589 SUPERFAMILY "Winged helix" DNA-binding domain 5 69 IPR036390 -
Sebi390g00040 589 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi390g00040 589 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi390g00040 589 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi390g00040 589 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 4 388 IPR027725 -
Sebi390g00040 589 Pfam HSF-type DNA-binding 10 68 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi390g00040 589 SMART hsfneu3 6 204 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi390g00040 589 MobiDBLite consensus disorder prediction 376 412 - -
Sebi390g00040 589 Coils Coil 232 259 - -
Sebi390g00040 589 FunFam Heat stress transcription factor B-4 2 84 - -
Sebi390g00040 589 Gene3D - 2 94 IPR036388 -
Sebi390g00040 589 Gene3D - 143 205 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi390g00040 Sebi-Chr390 633233 636856 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi390g00040 4 68 HSF AT1G32330 87.692 5.47e-33 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Sebi390g00040 HSF_DNA-bind 5.3e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi390g00040 K09419 - gmx:100815121 636.721