Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi390g00039 ATGTCAGACCGGGGTACCTTCTCCGGCGACTCGGCCATGGATGCTGCTGCTAATATGGAAGGAGAGAGAAGAAAAAAGGAGCACAAAGTTCCTTTCTTAAAGCTGTTTTCCTTTGCTGACTACTATGACTGCTTGGCTTACCTTTTCCCCAAAGAAGCTTCTCACGAAGTTGCCAAGTACTCGCTGGATTTTGTGTATCTAAGTATAGCAATACTGTTTTCATCTTGGACAGAGGTGGCTTGTTGGATGCATACTGGGGAACGTCAAGCAGCAAAGATGAGATTGGCTTATTTAAAGTCAATGCTGAATCAAGATATAAGCCTATTTGATACCGAGGCCTCAACTGGAGAGGTCATTTCTGCCATTACAAGTGACATTATCATTGTTCAAGATGCCCTATCCGAAAAGGTAGGGAATTTCATGCACTACATAAGCCGTTTTATTGCGGGGTTTACTATTGGCTTTGTGAGAGTGTGGCAGATCAGTTTAGTGACACTTTCAATTGTCCCCTTGATTGCCCTTGCTGGAGGCCTTTATGCATATGTCACAATTGGCCTCATTGCTAAAGTTCGGAAAGCCTATGTCAGAGCTGGTGAAATCGCTGAAGAGGTGATAGGCAATGTTAGAACGGTACAAGCATTTGCAGGAGAAGAAAGAGCAGTGAAATCATACAAAGCGGCTCTCATGAAAACTTACTCAAATGGTCGAAAAGCAGGTTTAGCAAAGGGTCTAGGACTTGGCTCAATGCATTGTGTCCTTTTTCTGTCTTGGGCTTTGCTTGTTTGGTTCACTAGCATTGTTGTTCACAAGAATATTGCCAATGGGGGCGAGTCTTTCACTACCATGCTCAATGTTGTAATTTCTGGCCTGTCACTTGGACAGGCAGCACCAGATATCTCTGCATTTATCCGAGCAAAGGCAGCAGCTTATCCCATTTTTGAGATGATAGAGAGGGACACAATGACCAAAACAGCTCAAAAACTGGGAGAACATATTTATGGAAAAGATGATGCCACTCTTGAAGAACTAAAACGTGCTGTGAAGCTTTCAGATGCTCAGTCTTTCATTAACAATCTTCCTGACAGATTAGAAACTCAGGGGGATACAACTATCAGGTGGGCAAAAGCAAAGGATTGCAATATCTCGTGCTATGTGAAGAATCCATCAATCCTTTTGTTGGATGAAGCAACCAGTGCTCTGGATGCTGAGTCTGAGAAGAGTGTACAAGAGGCTCTTGATCGTGTCATGGTTGGTAGAACAACTGTGATAGTGGCACACAGACTTTCTACCATTAGGAATGCAGATGTGATTGCTGTTGTACAAGGAGGGAGGATTGTGGAAACTGGTAACCATGAAGAACTCATTTCCAACCCAACTAGTGTATATGCTTCTCTTGTTCAACTCCAAGAGGCAACTTCTTTGGAACGCCTCCCCTCAGTTGGATCTAGCTTGGGACGACAATCAAGCATAAATTACTCAAGAGAATTATCCCGTAGTGTCAGAAGCTTCGGTGGTAGTTTTCGATCAGATAAGGACTCTATTGGTCGGGTTTGTGCTGATGAAGGAGAAAAGGGAGGCAAGCCAAAGCACGTTTCAGCAAGAAGGCTATATTCTATGAATGTTGGTCTGGTTGTTGCTTCATTTATTATTGCCTTTCTCTTGAACTGGAGAATAACACTTGTTGTCATAGCCACATATCCTTTGATCATTAGTGGTCACATTAGTGAGAAACTTTTCATGAAAGGCTATGGTGGCAATTTGAGCAAAGCATATTTGAAAGCTAACATGCTGGCTGGGGAGGCTGTGAGCAATATACGCACTGTTGCTGCATTTTGTTCTGAAGAAAAGATCCTTGACCTTTATTATAATGAGCTTATTGAACCTTCCAAACGTTCATTTCAACGGGGCCAAATTGCTGGCATATTCTATGGCATTTCTCAATTCTTTATTTTCTCATCTTATGGCCTAGCCTTGTGCATTGGCTATGGGGGAGACTTTGGCACTAGCCCCAGACCTTTTGAAGGGAATCAAATGGTTGCATCAGTTTTTGAAGTGATGGATAGAAAATCAGGAATAGTGTGTGATACTGGAGAAGAGTTGAAGACAGTGGAGGGAACAATTGAGCTTAGAAGATCCATTTCAACTACCCTTCAAGGCCAGATATTTTATGATCCAACATCTGGGAAGGTGTTAATTGATGGAAAAGACATCACAAGACTTAATCTGAAATCTCTTAGGAAGCATATTGGTCTTGTGCAACAAGAACCAGCTCTTTTTGCAACATCAATATATGAAAATATTCTTTATGGGAAGGAAGGTGCCTCTGATTCAGAAGTGATTGAAGCAGCTAAGCTAGCAAATGCTCATAACTTTATAAGTGGTCTTCCAGATGGCTACTCCACCAAAGTGGGTGAAAGAGGAGTGCAACTATCTGGTGGCCAGAGACAAAGAGTGGCCATTGCCAGAGCTGTTTTAAAGAACCCTGAAATCTTGCTACTTGATGAAGCCACCAGTGCATTTGTGGAGTCAGAGCGTGTGGTACAACAAGCTTTGGACAGATTAATGCAGAACAGAACAACAGTTATGGTGGCACATAGGCTATCCACAATAAGGAATGCAGACCAAATCTCAGTTTTACAGGATGGAAAGATAATTGAGCATGGGACTCATTCAAGTCTTATAGAGAATAAAAATGGGGCATACTTTAAATAG 2712 0.4226 MSDRGTFSGDSAMDAAANMEGERRKKEHKVPFLKLFSFADYYDCLAYLFPKEASHEVAKYSLDFVYLSIAILFSSWTEVACWMHTGERQAAKMRLAYLKSMLNQDISLFDTEASTGEVISAITSDIIIVQDALSEKVGNFMHYISRFIAGFTIGFVRVWQISLVTLSIVPLIALAGGLYAYVTIGLIAKVRKAYVRAGEIAEEVIGNVRTVQAFAGEERAVKSYKAALMKTYSNGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSIVVHKNIANGGESFTTMLNVVISGLSLGQAAPDISAFIRAKAAAYPIFEMIERDTMTKTAQKLGEHIYGKDDATLEELKRAVKLSDAQSFINNLPDRLETQGDTTIRWAKAKDCNISCYVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVIVAHRLSTIRNADVIAVVQGGRIVETGNHEELISNPTSVYASLVQLQEATSLERLPSVGSSLGRQSSINYSRELSRSVRSFGGSFRSDKDSIGRVCADEGEKGGKPKHVSARRLYSMNVGLVVASFIIAFLLNWRITLVVIATYPLIISGHISEKLFMKGYGGNLSKAYLKANMLAGEAVSNIRTVAAFCSEEKILDLYYNELIEPSKRSFQRGQIAGIFYGISQFFIFSSYGLALCIGYGGDFGTSPRPFEGNQMVASVFEVMDRKSGIVCDTGEELKTVEGTIELRRSISTTLQGQIFYDPTSGKVLIDGKDITRLNLKSLRKHIGLVQQEPALFATSIYENILYGKEGASDSEVIEAAKLANAHNFISGLPDGYSTKVGERGVQLSGGQRQRVAIARAVLKNPEILLLDEATSAFVESERVVQQALDRLMQNRTTVMVAHRLSTIRNADQISVLQDGKIIEHGTHSSLIENKNGAYFK 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi390g00039 903 PANTHER ABC TRANSPORTER B FAMILY 535 686 IPR039421 -
Sebi390g00039 903 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 332 469 IPR027417 -
Sebi390g00039 903 Pfam ABC transporter 723 838 IPR003439 GO:0005524
Sebi390g00039 903 Pfam ABC transporter transmembrane region 538 662 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi390g00039 903 Pfam ABC transporter transmembrane region 47 287 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi390g00039 903 ProSitePatterns ABC transporters family signature. 810 824 IPR017871 GO:0005524|GO:0016887
Sebi390g00039 903 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 722 901 IPR027417 -
Sebi390g00039 903 Gene3D - 333 470 IPR027417 -
Sebi390g00039 903 Gene3D - 721 903 IPR027417 -
Sebi390g00039 903 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 64 304 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi390g00039 903 FunFam ABC transporter B family member 1 30 338 - -
Sebi390g00039 903 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 673 903 IPR003439 GO:0005524
Sebi390g00039 903 CDD ABC_6TM_Pgp_ABCB1_D1_like 37 312 - -
Sebi390g00039 903 FunFam ABC transporter B family member 28 693 903 - -
Sebi390g00039 903 SUPERFAMILY ABC transporter transmembrane region 47 317 IPR036640 GO:0005524|GO:0016020
Sebi390g00039 903 Gene3D ABC transporter type 1, transmembrane domain 535 716 IPR036640 GO:0005524|GO:0016020
Sebi390g00039 903 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 540 661 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi390g00039 903 Gene3D ABC transporter type 1, transmembrane domain 52 328 IPR036640 GO:0005524|GO:0016020
Sebi390g00039 903 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 235 467 IPR003439 GO:0005524
Sebi390g00039 903 SUPERFAMILY ABC transporter transmembrane region 540 661 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi390g00039 Sebi-Chr390 585912 592487 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi390g00039 545 903 Calmodulin-binding Proteins AT2G36910 40.603 1.65e-73 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi390g00039 K05658 - gmx:100810688 590.882