Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi390g00032 ATGGGCAAAAAGAAACCCAAAGATCTTCAACAAACACCCCAAAGCGACGCCGTTTCATCACCCCCTTCCGGCATTTTCAACACGCTCTTTGCCAACGCGCCGGAACAGACCACCGCCGCATCGCTATTTTCCGAAGATAACCCTTTTCGGAGAAAGCCTCCACAACCTGTTTCGGCTTCCGACGCACCCAATCATACTCAGAGCCCCAACACCGGCGGCTCCGTGAACCACGATACCGGAGACGAGAAGAAGAGGAAAAGGAACAAAGAGAAAATCCCCACCCTTGATTCGGATTCCGTAATCGAAGCTTCAGAAAAGAAGAGGAAACAGGGGCGAAGAGGGGAAGAGGAAGAAGAGGAAAGGGATGAGCTTGAGAAAGAGTGGGAAGATAGGAAGTATGGGGTGGTAGATGGAGGAGATGAAGGTGGAAGGGAAGAGTCTGAGAATAAAAAAACTGTTGGGAGCAAGAGGAAGGTGCTGGATAATCCCGCTGATATGTTGGTTTCAAAGGAAGGTTTTGATGATGAGGATAAACTTTTGAGAACTATTTTTGTTGGGAATTTGCCTCTCAAGGTGAAAAAGAAGACTTTGTTGAAAGAGTTTAAGAAATTTGGTGAGGTTGAATCTGTGAGGATTCGCTCTGTACCTTTACAAGATACCAAAAAACCTAGAAAAGGGGCTATCCTTTCAAAGAAAATAAATGATTCGGCTGATAGTGTTCACGCATACATAGTTTTCAAAACTGAGCAATCTGCACAGGCTTCTTTGTCCCACAACATGACTGTGGTTGAAGGAAATCACATCCGTGTTGATAGGGCATGCCCACCCCGCAAGAAACTTAAAGGGGAGAGTGCTCCGCTTTATGATAATAAAAGAACTGTTTTTGTAGGCAACCTGCCATTTGATGTGAAGGATGAAGAACTTTATCAGTTATTTTGTGGTATATCCAACCTAGAATCAAGTATAGAAGCGGTTAGAGTGGTTCGAGATCCTCATCTTAATGTTGGAAAGGGTATTGCCTATGTGCTGTTTAAAACAAAGGAAGCTGCTAATTTTGTTGTAAAGAAACGGAAGCTGAAGCTTAGAGATCGAGAGTTGAGAATCTGTCATGCCAAAGCAGATGCTACCCCATCTAAAAGGCCGAACCCATCATCCCCAGCACAAGCTCCTAGTACCCCTGCAAAGAAGCCGTCTGTAGCTCCAAGGTCTCCTTCAAGTAGTAATAACAGGTCTAACAGAAAAACTAATTCATCTTATCAGGGTCTACGTGCAACCAAATCCAATACCCACAAGAAAATTCAAGGAGGAGAAAAAACAACAGAGCGCAAGATGAAAAGACCAGCAGTAGCTGCCAGAAAGGCTAAAGCAAATTTTCTTAAGGAGGGTGGTACACCGAAACAAGCAGGGTCAAAACGCAAGCTTGATAGTCGTACTCCAGATAAACAAGCAGGGTCAAAACGCAAGCTTGATAGTCGCACTCCAGATAGCTCCCGACGAATTAAGAAAGCCAAAAAGAACAGGTAG 1524 0.4442 MGKKKPKDLQQTPQSDAVSSPPSGIFNTLFANAPEQTTAASLFSEDNPFRRKPPQPVSASDAPNHTQSPNTGGSVNHDTGDEKKRKRNKEKIPTLDSDSVIEASEKKRKQGRRGEEEEEERDELEKEWEDRKYGVVDGGDEGGREESENKKTVGSKRKVLDNPADMLVSKEGFDDEDKLLRTIFVGNLPLKVKKKTLLKEFKKFGEVESVRIRSVPLQDTKKPRKGAILSKKINDSADSVHAYIVFKTEQSAQASLSHNMTVVEGNHIRVDRACPPRKKLKGESAPLYDNKRTVFVGNLPFDVKDEELYQLFCGISNLESSIEAVRVVRDPHLNVGKGIAYVLFKTKEAANFVVKKRKLKLRDRELRICHAKADATPSKRPNPSSPAQAPSTPAKKPSVAPRSPSSSNNRSNRKTNSSYQGLRATKSNTHKKIQGGEKTTERKMKRPAVAARKAKANFLKEGGTPKQAGSKRKLDSRTPDKQAGSKRKLDSRTPDSSRRIKKAKKNR 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi390g00032 507 MobiDBLite consensus disorder prediction 77 157 - -
Sebi390g00032 507 CDD RRM2_RBM34 293 369 IPR034221 -
Sebi390g00032 507 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 294 367 IPR000504 GO:0003723
Sebi390g00032 507 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 183 224 IPR000504 GO:0003723
Sebi390g00032 507 SUPERFAMILY RNA-binding domain, RBD 174 281 IPR035979 GO:0003676
Sebi390g00032 507 MobiDBLite consensus disorder prediction 1 157 - -
Sebi390g00032 507 SUPERFAMILY RNA-binding domain, RBD 287 384 IPR035979 GO:0003676
Sebi390g00032 507 Gene3D - 177 280 IPR012677 -
Sebi390g00032 507 MobiDBLite consensus disorder prediction 371 507 - -
Sebi390g00032 507 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 272 462 - -
Sebi390g00032 507 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 292 373 IPR000504 GO:0003723
Sebi390g00032 507 MobiDBLite consensus disorder prediction 59 76 - -
Sebi390g00032 507 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 275 IPR000504 GO:0003723
Sebi390g00032 507 Coils Coil 107 127 - -
Sebi390g00032 507 SMART rrm1_1 182 271 IPR000504 GO:0003723
Sebi390g00032 507 SMART rrm1_1 293 369 IPR000504 GO:0003723
Sebi390g00032 507 MobiDBLite consensus disorder prediction 430 447 - -
Sebi390g00032 507 MobiDBLite consensus disorder prediction 398 429 - -
Sebi390g00032 507 MobiDBLite consensus disorder prediction 11 44 - -
Sebi390g00032 507 MobiDBLite consensus disorder prediction 466 497 - -
Sebi390g00032 507 CDD RRM1_RBM34 181 271 - -
Sebi390g00032 507 Gene3D - 288 380 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi390g00032 Sebi-Chr390 508962 511668 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi390g00032 148 372 Eukaryotic Initiation Factors Gene Family AT1G22760 23.413 4.69e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi390g00032 K14837 - gmx:100784494 605.905