Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi390g00030 ATGTCTCCTTCAAAAGCAGATAATTCAGAAACTCCATCACAACCAGCAGCTACAACCTACAGCACCTCACCAGCGCTTGTAGCCTTCACACTCGCCGTGGTTGTGATTTGCTTTGTAGGTTTCAGCGTAGTTTACTTCTGCAGGTGTTATTTTGCAAGTTTCATGCACACTTGGGCATTTCAACGAACAGCTTCAGGCACCATCGTTCGTCTTTCCAACAACAATCAATCTCCAAACAGAGGCCTCGATTCTTCTCTTCTCCAATCCTTCCCTTCCTTTCTCTATTCCTCTGTCAAGAATCTCCGTAAGGAGAAAAACTATAGCCTCGAATGCGCCATTTGTTTGTTGGAGTTCGAGGAAGATAGCATGCTTCGTCTTCTAACCGTTTGCTACCATGTCTTCCATCAAGAATGCATTGACCTCTGGCTCAGTTCACACAAGACTTGCCCTGTTTGTCGTAAGGATCTTGAATATTCCCCAACAAACGAAACGCGAAAGTCTCAGGAGGTTGCAGAGGATAATCTCCGTGTAGTAGAAGAGAGCAGGGATCATGTGTGCATTGAGATCAGAAACGGCATGAAGATAGCCCAGAATGAAACAGTATCAAAACTTGCGCCGCCTGAGATCAATTCATCTCTGGTCTCGCCTGCAACACAGCTCATTCTCTACATCGCTACTTGTTGCATCTATGACAGTACCAGGTTGGATGTTGCTGATACTTTGTCATGTCAGGAAAGTTCAGATCAACCAATTCCAACAGAAAGTACTAACACAACACCTGAAGGTCCCGCAACAAATGAATCTTTGCGAGCACCAGTTGATGAGACGGATGATAATGTGGATATATGCATTCAACACAAGATTAATATGAGGGGGCCTAGAGTTCTTATGCCTAAGGTCATGCAAGGTAGACAGGAATTGGTTACCACAACTTATGATCCAGAAAATTCAAAGAAGGAGCTTGCAAGTGCAATTGTCTTGCATGAATATCCACTTTCAATAGTGGATCATCTGGGGTTTAGGAGATATTCAGCTGCACTCCAACTATTCCTTCTCAAAACACTACCAAGAAGAGAATTCAAAGTCTATGATTTTGAAAGATCAATAGCTATGAAATTGTTTGATAATAATGAAGGAAGAGTGGCTATTACATCAAATATGAGGAAGTTGCACCCGACCCCCACTCACCCCATTGCCATGCTTCACCCGGATGCATAG 1218 0.4343 MSPSKADNSETPSQPAATTYSTSPALVAFTLAVVVICFVGFSVVYFCRCYFASFMHTWAFQRTASGTIVRLSNNNQSPNRGLDSSLLQSFPSFLYSSVKNLRKEKNYSLECAICLLEFEEDSMLRLLTVCYHVFHQECIDLWLSSHKTCPVCRKDLEYSPTNETRKSQEVAEDNLRVVEESRDHVCIEIRNGMKIAQNETVSKLAPPEINSSLVSPATQLILYIATCCIYDSTRLDVADTLSCQESSDQPIPTESTNTTPEGPATNESLRAPVDETDDNVDICIQHKINMRGPRVLMPKVMQGRQELVTTTYDPENSKKELASAIVLHEYPLSIVDHLGFRRYSAALQLFLLKTLPRREFKVYDFERSIAMKLFDNNEGRVAITSNMRKLHPTPTHPIAMLHPDA 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi390g00030 405 SMART ringv_2 110 153 IPR011016 GO:0008270
Sebi390g00030 405 CDD RING-H2_EL5-like 110 153 - -
Sebi390g00030 405 SUPERFAMILY RING/U-box 89 159 - -
Sebi390g00030 405 PANTHER RING FINGER DOMAIN-CONTAINING 9 162 - -
Sebi390g00030 405 MobiDBLite consensus disorder prediction 244 265 - -
Sebi390g00030 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 159 IPR013083 -
Sebi390g00030 405 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Sebi390g00030 405 FunFam E3 ubiquitin-protein ligase ATL6 70 159 - -
Sebi390g00030 405 SMART ring_2 111 152 IPR001841 -
Sebi390g00030 405 Pfam Ring finger domain 110 153 IPR001841 -
Sebi390g00030 405 MobiDBLite consensus disorder prediction 244 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi390g00030 Sebi-Chr390 473615 478040 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi390g00030 24 169 Rapid Response to Elicitors AT2G35000 42.282 1.24e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi390g00030 - - ccaj:109800443 224.942