Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi38g00199 ATGGTACCATTGACTTCAGAACTCAAGAGAACAGCAGGTGTCTTTGCTGAAACTGCATGGGCAGGTGCTGCATATTATTTGCTGTTATACATGCTTGCTAGTCATATAGTTGGTGCGTTTTGGTACTTGTTAGCTATTGAACGCAATGACTCATGCTGGCAGGAGGCTTGCAGTGAGAATGGGTGCAATAAAAACTTCCTGTATTGTGGCAACCGCTACACAGAAGGTTATAGTGCCTGGCAGAATAGAAGTAAAGATATTCTTAAGTCAAAGTGCTCTGCAGATGATGATCCTCCACCTTTTGATTATGGTATTTTTTCACAAGCTTTGACATCTGGTATTGTTTCATCTAAAAAGTTCTTCTCCAAGTACTGTTACTGTTTATGGTGGGGGCTCCAGAATTTGAGTACACTTGGCCAGGGGCTTCAAACTAGCACATACCCTGGGGAGGTTATCTTTTCAATAGCACTAGCTATATTTGGCCTCATCCTCTTTGCACTTCTAATTGGCAATATGCAGACATATCTTCAGTCTCTTACCATTAGGCTCGAGGAGATGAGAGTCAAAAGGCGTGATTCAGAACAGTGGATGCATCATCGCTTGCTCCCACAAGAACTTAGAGGGCGTGTGAGACGGTATGATCAATACAAGTGGTTAGCAACGCGTGGTGTAGATGAAGAAAGTTTAGTTCAGAGTCTACCAAAGGATCTTCGAAGAGATATTAAACGTCATCTCTGTTTGGCATTAGTGAGGAGGGTTCCACTATTTGAGAGTATGGATGAGAGATTGCTTGATGCCATATGCGAGAGACTGAAACCGTGTTTATTTACAGAGAATACTTACCTTGTCCGGGAAGGAGATCCAGTTGATGAGATGCTTTTCATCATACGTGGTCGCCTTGAGAGTGTTACGACAGATGGAGGGAGGAGTGGATTTTTCAACCGTAGTTTTCTAAAAGAGGCTGACTTCTGTGGGGAGGAGCTTTTAACCTGGGCCCTGGACCCCAGATCTGGTTCTAATCTCCCATCTTCTACTCGAACAGTTAAGGCATTAACAGAGGTTGAGGCTTTTGCCTTAACAGCTGATGAGTTAAAATTTGTCGCGAGTCAGTTTAGGCGCCTTCACAGTAGACAAGTTCAACACACTTTCCGTTTTTACTCCCAACAATGGAGGACTTGGGCTGCATGCTTTATTCAAGCAGCATGGCGTCGATATTGTAAAAAGAAGATTATGAAGCTTCGTCAAAAGGAAGAAGCTGATGAGTCAGAAGGAACTCAAGACAATGCTGGTGGCAGTTCCTACAGCCTTGGTGCCGCCTTGTTAGCCTCTAAGTTTGCTGCACACACTCTCCGTGGTGTACATCGTAATCGACTTGCTAAGACTGCCAGGGAGTTGGTGAAACTACAGAAACCCCCTGAGCCTGACTTTACTGCAGATGATGCAGACTAA 1449 0.4424 MVPLTSELKRTAGVFAETAWAGAAYYLLLYMLASHIVGAFWYLLAIERNDSCWQEACSENGCNKNFLYCGNRYTEGYSAWQNRSKDILKSKCSADDDPPPFDYGIFSQALTSGIVSSKKFFSKYCYCLWWGLQNLSTLGQGLQTSTYPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQELRGRVRRYDQYKWLATRGVDEESLVQSLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTENTYLVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSFLKEADFCGEELLTWALDPRSGSNLPSSTRTVKALTEVEAFALTADELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYCKKKIMKLRQKEEADESEGTQDNAGGSSYSLGAALLASKFAAHTLRGVHRNRLAKTARELVKLQKPPEPDFTADDAD 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi38g00199 482 Gene3D Jelly Rolls 253 373 IPR014710 -
Sebi38g00199 482 SMART cnmp_10 255 386 IPR000595 -
Sebi38g00199 482 Pfam Cyclic nucleotide-binding domain 276 366 IPR000595 -
Sebi38g00199 482 FunFam Cyclic nucleotide-gated ion channel 1 182 246 - -
Sebi38g00199 482 FunFam Cyclic nucleotide-gated ion channel 1 253 371 - -
Sebi38g00199 482 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 2 476 - -
Sebi38g00199 482 CDD CAP_ED 255 386 IPR000595 -
Sebi38g00199 482 ProSiteProfiles cAMP/cGMP binding motif profile. 255 339 IPR000595 -
Sebi38g00199 482 SUPERFAMILY Voltage-gated potassium channels 19 218 - -
Sebi38g00199 482 SUPERFAMILY cAMP-binding domain-like 184 375 IPR018490 -
Sebi38g00199 482 Pfam Ion transport protein 8 181 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Sebi38g00199 482 Gene3D - 1 180 - -
Sebi38g00199 482 Gene3D Helix hairpin bin 183 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi38g00199 Sebi-Chr38 2779902 2783341 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi38g00199 1 479 Ion Channels AT5G57940 81.120 0.0 810
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi38g00199 K05391 - gmx:100784327 862.448