Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi38g00153 ATGGGCACCGGTAGTTTTACTCAAGTTAAAGGTGACACCTTTCTGCCTCCATCAGAACAGCCACCCTATTTTCTTTCTCAGCCAAACCCACCTTTCCCTCCCATTATTCGATCTGATAATCTCAGTTTGAACGATAAGGCCTTGAAGGTTAGTCCTAGCATACTCCTTATCATCATAATTCTCGCTATTGTTTTCTTCATTTCTGGTTTGCTTCACCTCCTCGTTAGATTTCTATGGAGACCTCAGAGTAGAGAGCCTGATGATTTGGACAATGTCACTGCTCTTCAAGGTCAATTGCAGCAACTCTTCCATCTCCATGATGCTGGTGTTGACCAGTCCTTCATTGATACCCTCCCTGTCTTCTTTTACAAAGCTATCATAGGATTGAAGAACCCTTTTGATTGTGCTGTTTGTTTGTGTGAATTTGAGCCAGAGGACAAGCTAAGGTTGTTGCCTAAATGTAGCCATGCTTTTCACATGGAGTGTATTGACACATGGCTCTTGTCACACTCTACTTGTCCTCTTTGTAGAGCTAGCTTGCTCCCTGATTTCTCTGGAAACAACAACTGTTCCCCTATTGTTCTTGTTCTAGAATCTGGGAGTGATAGTTCAAGGGAGATTGTTCCAGAAAGAGAGGCTTCTGGTGCTGTTGTTGGAAGAACAAGTTCGGTTATCACAACAAATTCTCGTCTTGGTTGCCGTGGAGAAAGCGAATTTGGATCAACCCGTGTTGATTTAGCTTCAAGTGAGAATCCTGATCCAAACATAGCAGGGGATGGTGTGGAGAAGGTGGTTACTGTTAAGCTGGGAAAGTACAGGAACGTGGATGGTGGCTGTGAAGAAGGAAGTAGTACCAACAATGTAGATGCTAGAAGGTGCTTTTCTATGGGGTCATTTGCTTATGTTTTGGATGAAAGTTCCTCACTTCAGGTACCTATAAGAACCCCAATCAAGCAGCAATCAAGTAAGAAAAGGTCTGTTTTGCCTTTGACCCCTGGACACAGGCCTGCTATGTCAGAATGTGACTGTGAATCCAGAAGAGATTTCAAATTTTCAGGTTTTGATACAACTAGAGGTGTTGAGGACCTTACTGGGACATCAAGTACTGGGAATGGTAGTGGGGCTGCTATTGGAAGGAGCAGAAAGGAGAGCTTTTCTATCTCAAAGATTTGGCTAAGGGGGAAGAAGGATAAGTCAAATTCAGTAGCAGATTCATCCAGAAGGGCTGTTTCATTCAGGTTCCCAGCACAGCATAATGTTGTTGGTGATAGTGCTACAGATGATTTGAAGGGCAAGAATGGCAAATTTGATACAAGGAGTACTATTTCTGAGATGGATATTGGGAAATGGGAAAATGGAGGAGGAAGTGAGTTTGGGTATGATGAGGAAAACCAGAGCTGTTATAGTATGGATTCTCAAGCTAGGGCACCTTCTTTTGCTAGAAGGACTTTGCTTTGGCTCACAGGAAGACAGAACAAGGTTGTTCACTCATCCTATGCTTCCAATCTCTAG 1512 0.4325 MGTGSFTQVKGDTFLPPSEQPPYFLSQPNPPFPPIIRSDNLSLNDKALKVSPSILLIIIILAIVFFISGLLHLLVRFLWRPQSREPDDLDNVTALQGQLQQLFHLHDAGVDQSFIDTLPVFFYKAIIGLKNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLPDFSGNNNCSPIVLVLESGSDSSREIVPEREASGAVVGRTSSVITTNSRLGCRGESEFGSTRVDLASSENPDPNIAGDGVEKVVTVKLGKYRNVDGGCEEGSSTNNVDARRCFSMGSFAYVLDESSSLQVPIRTPIKQQSSKKRSVLPLTPGHRPAMSECDCESRRDFKFSGFDTTRGVEDLTGTSSTGNGSGAAIGRSRKESFSISKIWLRGKKDKSNSVADSSRRAVSFRFPAQHNVVGDSATDDLKGKNGKFDTRSTISEMDIGKWENGGGSEFGYDEENQSCYSMDSQARAPSFARRTLLWLTGRQNKVVHSSYASNL 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi38g00153 503 CDD RING-H2_EL5-like 134 177 - -
Sebi38g00153 503 ProSiteProfiles Zinc finger RING-type profile. 135 177 IPR001841 -
Sebi38g00153 503 MobiDBLite consensus disorder prediction 1 22 - -
Sebi38g00153 503 FunFam RING-H2 finger protein ATL46 97 182 - -
Sebi38g00153 503 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 47 391 - -
Sebi38g00153 503 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 182 IPR013083 -
Sebi38g00153 503 SMART ring_2 135 176 IPR001841 -
Sebi38g00153 503 Pfam Ring finger domain 134 177 IPR001841 -
Sebi38g00153 503 SUPERFAMILY RING/U-box 114 188 - -
Sebi38g00153 503 MobiDBLite consensus disorder prediction 317 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi38g00153 Sebi-Chr38 2186370 2187881 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi38g00153 40 501 C3H Transcription Factor Family AT2G18650 45.756 6.87e-103 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi38g00153 - - gmx:100797283 776.548