Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi38g00141 ATGGGTAAGTGGTTCTGGTGCCATTTTCTTATCAAGATTTTGGTTGTGCTGCTACATATACAAAGTGGGAGTGGGTTAAATGCAACATCAATGGGAGTGATCAAGTTGAGAGTCGGGGTACCCAAGAAAGACGGTTTCTCCCAATTTGTGAACGTAGCTTGGGACTCTCGGGAAAACAAATACAATATCACTGGATATTGCATGGAGGTCTTCTATGCCGTTATAAACCACTTACCTTTCAACGTTTCTCTACAAATTGAACCTTATGTTAATGAATCAGGACACAGTGCTGGAACATACGATTCACTTCTCCAACACCTCCCAACCAAGTATGATGTTGTGGTGGGGGATATATCAATCGTGGCTAACCGTTCACAATATGTAGATTTCACACTTCCATATTCAGAATCAGGAGTTAGAATGTTAGTACCAGTTCAACATGGGAGGCACCAAACCATGTGGATCTTTGTGAAACCCTTCAGCTGGGATCTTTGGTTGTGCATAGTCATCATCTCTATGTTCATAGGGCTTGTCATACTCATCATGGAAAGAAATGCACATACCCTGCCTAATCACCACAACGAGGCTTCCCCAAATCGAAACCACCTCAGCGCCATAACCATCTTATGGGCAAGTAGTCGCCAAGAACTGCTCGAGATTTGTGTTGATGGTTTGGCTTCTGTTGTCGATCTGTTGGTACATCAATTGAAATTTAACACATCCAAGCTCAAGGGATATAACAACATTTCTGAATATCACCATGCTTTGAGTATTGGAAGCGAAGTCGCAGCTATATTCGATGAAGTGCCCTATCTTAAGGCGTTCCCTTTAAACTCTAATCTTACAGCCCACTTTTCGAGAGCTATATTGAACGTGACTGAAAGTGATTTGATGAATGAGATTGAGGAGAATTATTTTGGGAAGTACTATGAATTAGAAGAGAAGTCAACGCAAACGTGTCCTCCAAGCCTCACGTTTTATAGCTTTGCGGGGCTGTTCATGATAATGGGGATTGCTACTTTGTTAGCGTTAGTGGTCTCAGAAACGGTTATTTGGCAAACACCCATTTTGATGGCTAAAGCATACAGTCAAAAATATTTGTTCCGTACTTCATTTGTTCATCCAAGGTCTAATGATTCAACGCATGGAGAGGGTGGAATAGAAATGGAAGACGTTTAA 1179 0.4156 MGKWFWCHFLIKILVVLLHIQSGSGLNATSMGVIKLRVGVPKKDGFSQFVNVAWDSRENKYNITGYCMEVFYAVINHLPFNVSLQIEPYVNESGHSAGTYDSLLQHLPTKYDVVVGDISIVANRSQYVDFTLPYSESGVRMLVPVQHGRHQTMWIFVKPFSWDLWLCIVIISMFIGLVILIMERNAHTLPNHHNEASPNRNHLSAITILWASSRQELLEICVDGLASVVDLLVHQLKFNTSKLKGYNNISEYHHALSIGSEVAAIFDEVPYLKAFPLNSNLTAHFSRAILNVTESDLMNEIEENYFGKYYELEEKSTQTCPPSLTFYSFAGLFMIMGIATLLALVVSETVIWQTPILMAKAYSQKYLFRTSFVHPRSNDSTHGEGGIEMEDV 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi38g00141 392 FunFam Glutamate receptor 2.7 31 152 - -
Sebi38g00141 392 Pfam Ligated ion channel L-glutamate- and glycine-binding site 57 144 IPR019594 GO:0004970|GO:0016020
Sebi38g00141 392 Gene3D - 29 152 - -
Sebi38g00141 392 SMART GluR_14 35 308 IPR001320 GO:0015276|GO:0016020
Sebi38g00141 392 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 227 353 IPR015683 -
Sebi38g00141 392 Gene3D - 153 214 - -
Sebi38g00141 392 SUPERFAMILY Periplasmic binding protein-like II 32 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi38g00141 Sebi-Chr38 1984813 1986720 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi38g00141 35 374 Ion Channels AT2G29110 31.494 7.28e-49 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi38g00141 K05387 - gmx:100783907 402.905