Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi38g00138 ATGGTACTTCCTTCTTTCCCTTCCCCTGCTAAAATACTAATTGGCCTCTCCTTAGACCCAAATGACAGCAAGGAGATTCTCTCATGGGCAATAAGAGTTCTAGCCAATCCTAATGACAACATTGTAGCCGTGCATGTTCTTGTTGCTGAGAATAAGAAGAAACGTGTCTCAGTCAGAAGAAGGCAATCACAACTTAGGCAGGCAAAAGCATATGTTATATCTGTGCTTGGAGAATTTGCACAAACCTGTTGGTCTAAGCAGGTTAATTTGGAGGCCAAAGTGGCACTCAGTTCCACAGTAGGTGAAGGTTTAGTCCATGAAGCTAAATCCATCTCTGCTGATTTTCTTCTTCTTCGTGGCTCAAGAAACCAAACAAATAGATTTGGAGCCTCTAAAGGAATTACCAAGTATTGCTTTGAGCATGCACATGAAGGCTGTTCAGTGGTCTCAGTTGGGAAATGTACAAAGGCAGAGCCAAATGCCAATTCAAATTCAACACATTCCCAAGTAGCAGATAATCGTCAACCAATTTCAAGAAGGTTTAAGAAGAAGGATAACCAATGTGACAAGGCTACCTCCCCTGTTCTGGAGGATTTCATCATAGGAACAAGGGCACAGAACAGTTCACCAAGAACTGTACTTGATGCTCTGGAGGGACAATCAAACAGCACAGAAGATGACACCTTTAGCACTAGGGTCTCAAGCAGCACATATACTCCTTCATCAGGTCCTAAGATTAAGAGCCAATCCAAGTTAAGAAAATCACAATTCTCATTCAGGTTCATAGTCTCATTCCTTGGTTCACCATTCAGAAGAAGAAACTTGAGCATATCCAAAAATGAAAAGCCTCAGCCCATGTTGAAGTGCTTCAGCTATGAAAAGATATCCAATGCTACTAATGACTTCCACCAAGATAATTTGGTTGGAAGAGGTGGGTACTCGGAAGTATACAAAGGTGATCTTTCAAATGGACAAACCATTGCTGTGAAGAGGTTGGCTAAGGACAACAAGGATCCTAATAAGGAAAAGGAATTCCTTATGGAGTTGGGTGTTATTGGACATGTTTGCCATCCTAATACTGCAACTTTATTGGGCTACTGTGTTGAAAATGGGCTCTATCTCATTTTCAATTACTCTCAAAATGGAAACTTGGCAACTGCATTGCATGGTCTTACTCTTATTACTGATTTTGGGCTTGCAAAGTGGCTTCCTAACAAGTGGACTCATCATGCTGTAATCCCTGTGGAGGGCACATTTGGATACTTAGCACCAGAGTACTTTATGCATGGAATTGTGGATGAGAAAACAGATGTTTTTGCATTTGGAGTTCTTCTTCTGGAGATTGTAACTGGACGAAGACCTGTTGATTCATCAAAGCAAAACCTTCTCCTATGGGCAAAGCCATTGATGGAATCAGGAAATATTGGTGAGCTAGCTGATCCAAGAATGGAAGGTAAATATGATGAAGAGCAATTGTATAGGGTAGTGCTAACAGCTTCATATTGTGTGAGACAAACTGCCATGTGGCGTCCCCCAATGAGCGAGGTGTTAGAGCTGCTAACCAGTGGCCAAGACTGTGAGGTTGGAAAGAGCTGGAGGATCCCTAAATTCACTTCTGATGAATTGGATGATTATTCTATGGTTTTTGGATATGATGTCCCTTCAGACATATCTCTGGAGGATTATTTGTGA 1692 0.4161 MVLPSFPSPAKILIGLSLDPNDSKEILSWAIRVLANPNDNIVAVHVLVAENKKKRVSVRRRQSQLRQAKAYVISVLGEFAQTCWSKQVNLEAKVALSSTVGEGLVHEAKSISADFLLLRGSRNQTNRFGASKGITKYCFEHAHEGCSVVSVGKCTKAEPNANSNSTHSQVADNRQPISRRFKKKDNQCDKATSPVLEDFIIGTRAQNSSPRTVLDALEGQSNSTEDDTFSTRVSSSTYTPSSGPKIKSQSKLRKSQFSFRFIVSFLGSPFRRRNLSISKNEKPQPMLKCFSYEKISNATNDFHQDNLVGRGGYSEVYKGDLSNGQTIAVKRLAKDNKDPNKEKEFLMELGVIGHVCHPNTATLLGYCVENGLYLIFNYSQNGNLATALHGLTLITDFGLAKWLPNKWTHHAVIPVEGTFGYLAPEYFMHGIVDEKTDVFAFGVLLLEIVTGRRPVDSSKQNLLLWAKPLMESGNIGELADPRMEGKYDEEQLYRVVLTASYCVRQTAMWRPPMSEVLELLTSGQDCEVGKSWRIPKFTSDELDDYSMVFGYDVPSDISLEDYL 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi38g00138 563 Gene3D Transferase(Phosphotransferase) domain 1 378 531 - -
Sebi38g00138 563 ProSitePatterns Protein kinases ATP-binding region signature. 308 330 IPR017441 GO:0005524
Sebi38g00138 563 Gene3D HUPs 7 151 IPR014729 -
Sebi38g00138 563 Gene3D Phosphorylase Kinase; domain 1 268 377 - -
Sebi38g00138 563 SUPERFAMILY Protein kinase-like (PK-like) 284 545 IPR011009 -
Sebi38g00138 563 CDD USP_Like 11 151 - -
Sebi38g00138 563 Pfam Protein kinase domain 394 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi38g00138 563 Pfam Protein kinase domain 302 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi38g00138 563 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 9 143 - -
Sebi38g00138 563 MobiDBLite consensus disorder prediction 158 189 - -
Sebi38g00138 563 ProSiteProfiles Protein kinase domain profile. 302 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi38g00138 563 PANTHER OS08G0249100 PROTEIN 394 533 IPR046958 -
Sebi38g00138 563 MobiDBLite consensus disorder prediction 210 249 - -
Sebi38g00138 563 MobiDBLite consensus disorder prediction 158 175 - -
Sebi38g00138 563 FunFam Putative receptor-like serine/threonine-protein kinase 269 378 - -
Sebi38g00138 563 Pfam Universal stress protein family 11 143 IPR006016 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi38g00138 Sebi-Chr38 1927787 1930559 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi38g00138 290 559 Trihelix Transcription Factor Family AT1G70460 32.344 2.48e-46 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Sebi38g00138 Usp 4e-05 CL0039
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi38g00138 - - gmx:100782832 914.45